RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 RILPL1Q5EBL4 403 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 MFSD14CQ5VZR4 134 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 TAPT1Q6NXT6 567 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 MORC4Q8TE76 937 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 MPHOSPH6Q99547 160 aaKnown RBP20.61■□□□□ 0.89
HMGA1-201ENST00000311487 GDPD2Q9HCC8 539 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 SYNGAP1Q96PV0 1343 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 INHAP05111 366 aa20.61■□□□□ 0.89
HMGA1-201ENST00000311487 B4DLN1 442 aa20.6■□□□□ 0.89
HMGA1-201ENST00000311487 MEIS1O00470 390 aa20.6■□□□□ 0.89
HMGA1-201ENST00000311487 IRX5P78411 483 aaPredicted RBP20.6■□□□□ 0.89
HMGA1-201ENST00000311487 SLC9C1Q4G0N8 1177 aa20.6■□□□□ 0.89
HMGA1-201ENST00000311487 INPP4AQ96PE3 977 aaPredicted RBP20.6■□□□□ 0.89
HMGA1-201ENST00000311487 ABHD16BQ9H3Z7 469 aa20.6■□□□□ 0.89
HMGA1-201ENST00000311487 JADE2Q9NQC1 790 aa20.6■□□□□ 0.89
HMGA1-201ENST00000311487 MSH4O15457 936 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 IGHA2P01877 340 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 HMGCRP04035 888 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 ZNF865P0CJ78 1059 aaPredicted RBP20.59■□□□□ 0.89
HMGA1-201ENST00000311487 PTGDRQ13258 359 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 LRRC37A2A6NM11 1700 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 DNAH12Q6ZR08 3092 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 NEMFO60524 1076 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 TXNP10599 105 aaKnown RBP20.59■□□□□ 0.89
HMGA1-201ENST00000311487 MARCKSP29966 332 aaPredicted RBP20.59■□□□□ 0.89
HMGA1-201ENST00000311487 CIITAP33076 1130 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 GBP4Q96PP9 640 aa20.59■□□□□ 0.89
HMGA1-201ENST00000311487 KIAA1217Q5T5P2 1943 aa20.58■□□□□ 0.89
HMGA1-201ENST00000311487 DDX11L8A8MPP1 907 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 MARCH6O60337 910 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 MYCNP04198 464 aaPredicted RBP20.58■□□□□ 0.88
HMGA1-201ENST00000311487 SMPD1P17405 629 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 MTFR1Q15390 333 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 PPP4R3AQ6IN85 833 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 NLRX1Q86UT6 975 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 TEX2Q8IWB9 1127 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 SLAIN1Q8ND83 568 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 PXYLP1Q8TE99 480 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 HAS1Q92839 578 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 ZNF577Q9BSK1 485 aa20.58■□□□□ 0.88
HMGA1-201ENST00000311487 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.58■□□□□ 0.88
HMGA1-201ENST00000311487 CYP3A7-CYP3A51PA0A087WV96 503 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 SPATA31C2B4DYI2 1134 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 CYBAP13498 195 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 PDIA4P13667 645 aaKnown RBP20.57■□□□□ 0.88
HMGA1-201ENST00000311487 CYP3A7P24462 503 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 TXKP42681 527 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 ITGB3BPQ13352 177 aaPredicted RBP20.57■□□□□ 0.88
HMGA1-201ENST00000311487 CALCRLQ16602 461 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 GNPTABQ3T906 1256 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 CYFIP1Q7L576 1253 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 AGO4Q9HCK5 861 aaKnown RBP20.57■□□□□ 0.88
HMGA1-201ENST00000311487 MKI67P46013 3256 aaKnown RBP20.57■□□□□ 0.88
HMGA1-201ENST00000311487 DOCK5Q9H7D0 1870 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 IPO5O00410 1097 aaKnown RBP20.57■□□□□ 0.88
HMGA1-201ENST00000311487 FIBPO43427 364 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 CHMP2AO43633 222 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 TRAPPC10P48553 1259 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 PRMT2P55345 433 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 Q4G0T1 1027 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 XRRA1Q6P2D8 792 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 CLEC17AQ6ZS10 378 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 MSL3Q8N5Y2 521 aaKnown RBP20.57■□□□□ 0.88
HMGA1-201ENST00000311487 C4orf32Q8N8J7 132 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 VTA1Q9NP79 307 aa20.57■□□□□ 0.88
HMGA1-201ENST00000311487 UBA1P22314 1058 aaKnown RBP20.56■□□□□ 0.88
HMGA1-201ENST00000311487 TNFAIP2Q03169 654 aa20.56■□□□□ 0.88
HMGA1-201ENST00000311487 ETNPPLQ8TBG4 499 aa20.56■□□□□ 0.88
HMGA1-201ENST00000311487 DDX41Q9UJV9 622 aaKnown RBP20.56■□□□□ 0.88
HMGA1-201ENST00000311487 GRIN1Q05586 938 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 IL17AQ16552 155 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 SCFD2Q8WU76 684 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 GPRASP2Q96D09 838 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 MBOAT7Q96N66 472 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 ZNF396Q96N95 335 aaPredicted RBP20.55■□□□□ 0.88
HMGA1-201ENST00000311487 UNC93B1Q9H1C4 597 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 STAM2O75886 525 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 GCFC2P16383 781 aaKnown RBP20.55■□□□□ 0.88
HMGA1-201ENST00000311487 KCNA2P16389 499 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 TECP42680 631 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 TTLL4Q14679 1199 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 CCDC62Q6P9F0 684 aa20.55■□□□□ 0.88
HMGA1-201ENST00000311487 FBXO46Q6PJ61 603 aaPredicted RBP20.55■□□□□ 0.88
HMGA1-201ENST00000311487 TCHHQ07283 1943 aa20.54■□□□□ 0.88
HMGA1-201ENST00000311487 POTEFA5A3E0 1075 aa20.54■□□□□ 0.88
HMGA1-201ENST00000311487 GGPS1O95749 300 aa20.54■□□□□ 0.88
HMGA1-201ENST00000311487 PTPAQ15257 358 aa20.54■□□□□ 0.88
HMGA1-201ENST00000311487 SPECC1Q5M775 1068 aa20.54■□□□□ 0.88
HMGA1-201ENST00000311487 TRMT44Q8IYL2 757 aaKnown RBP20.54■□□□□ 0.88
HMGA1-201ENST00000311487 MCOLN1Q9GZU1 580 aa20.54■□□□□ 0.88
HMGA1-201ENST00000311487 KCNMB3Q9NPA1 279 aa20.54■□□□□ 0.88
HMGA1-201ENST00000311487 DYNC1LI2O43237 492 aaPredicted RBP20.53■□□□□ 0.88
HMGA1-201ENST00000311487 CDC25AP30304 524 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 SETQ01105 290 aaPredicted RBP20.53■□□□□ 0.88
HMGA1-201ENST00000311487 STK38Q15208 465 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 MAP3K21Q5TCX8 1036 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 LRCH2Q5VUJ6 765 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 MOXD1Q6UVY6 613 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 CLIC6Q96NY7 704 aa20.53■□□□□ 0.88
HMGA1-201ENST00000311487 MTMR9Q96QG7 549 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms