RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ZBTB48P10074 688 aaPredicted RBP15.85■□□□□ 0.13
SS18-201ENST00000269137 ITGB5P18084 799 aa15.85■□□□□ 0.13
SS18-201ENST00000269137 COPB2P35606 906 aa15.85■□□□□ 0.13
SS18-201ENST00000269137 MORC3Q14149 939 aa15.85■□□□□ 0.13
SS18-201ENST00000269137 ZNF526Q8TF50 670 aaPredicted RBP15.85■□□□□ 0.13
SS18-201ENST00000269137 GTF3C2Q8WUA4 911 aaPredicted RBP15.85■□□□□ 0.13
SS18-201ENST00000269137 ANP32BQ92688 251 aaKnown RBP15.85■□□□□ 0.13
SS18-201ENST00000269137 CDK5RAP3Q96JB5 506 aa15.85■□□□□ 0.13
SS18-201ENST00000269137 NUDT12Q9BQG2 462 aa15.85■□□□□ 0.13
SS18-201ENST00000269137 PNMA3Q9UL41 463 aa15.85■□□□□ 0.13
SS18-201ENST00000269137 PSMD10O75832 226 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 SLC25A27O95847 323 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 MRPS9P82933 396 aaKnown RBP15.84■□□□□ 0.13
SS18-201ENST00000269137 SEMA3FQ13275 785 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 ARHGEF16Q5VV41 709 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 SPRYD7Q5W111 196 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.84■□□□□ 0.13
SS18-201ENST00000269137 ERMNQ8TAM6 284 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 NSUN6Q8TEA1 469 aaKnown RBP15.84■□□□□ 0.13
SS18-201ENST00000269137 PLIN2Q99541 437 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 NT5C3AQ9H0P0 336 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 JADE2Q9NQC1 790 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 RBPJLQ9UBG7 517 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 PFASO15067 1338 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 ARP10275 920 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 EIF2AK2P19525 551 aaKnown RBP15.84■□□□□ 0.13
SS18-201ENST00000269137 BMP6P22004 513 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 PPP2R5CQ13362 524 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 HAUS3Q68CZ6 603 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 OTOP1Q7RTM1 612 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 LUZP1Q86V48 1076 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 VSIG10LQ86VR7 867 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 MLKLQ8NB16 471 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 STAMQ92783 540 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 UIMC1Q96RL1 719 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 RIT2Q99578 217 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 BLOC1S4Q9NUP1 217 aa15.84■□□□□ 0.13
SS18-201ENST00000269137 CCND2P30279 289 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 CCT6AP40227 531 aaKnown RBP15.83■□□□□ 0.12
SS18-201ENST00000269137 AMPD3Q01432 767 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 CUL4BQ13620 913 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 LRCH2Q5VUJ6 765 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 KCTD17Q8N5Z5 321 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 ZNF577Q9BSK1 485 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 MOV10L1Q9BXT6 1211 aaKnown RBP15.83■□□□□ 0.12
SS18-201ENST00000269137 WDR11Q9BZH6 1224 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 KCNH7Q9NS40 1196 aa15.83■□□□□ 0.12
SS18-201ENST00000269137 CCL15-CCL14A0A0B4J2E2 113 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 IPO5O00410 1097 aaKnown RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 NR3C2P08235 984 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 RPA1P27694 616 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 CASP1P29466 404 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 ECM1Q16610 540 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 CCL15Q16663 113 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 CT47A1Q5JQC4 288 aaPredicted RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 ISM2Q6H9L7 571 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 B3GNT9Q6UX72 402 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 ANKRD23Q86SG2 305 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 DHX40Q8IX18 779 aaKnown RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 DNERQ8NFT8 737 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 BRI3BPQ8WY22 251 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 RAD54LQ92698 747 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 PURBQ96QR8 312 aaKnown RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 C7orf25Q9BPX7 421 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 PAGR1Q9BTK6 254 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 BLZF1Q9H2G9 400 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 TXNRD2Q9NNW7 524 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 RMND1Q9NWS8 449 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 PEX10O60683 326 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 GAS7O60861 476 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 NCAPH2Q6IBW4 605 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 SV2BQ7L1I2 683 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 ANKRD35Q8N283 1001 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 LARP4BQ92615 738 aaKnown RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 ZFP91Q96JP5 570 aaPredicted RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 IWS1Q96ST2 819 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 POLR3CQ9BUI4 534 aaPredicted RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 AGO4Q9HCK5 861 aaKnown RBP15.82■□□□□ 0.12
SS18-201ENST00000269137 DACH1Q9UI36 760 aa15.82■□□□□ 0.12
SS18-201ENST00000269137 BTBD19C9JJ37 291 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 STAM2O75886 525 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 RPN1P04843 607 aaKnown RBP15.81■□□□□ 0.12
SS18-201ENST00000269137 SPATA31C1P0DKV0 1188 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 MYCLP12524 364 aaPredicted RBP15.81■□□□□ 0.12
SS18-201ENST00000269137 ERCC3P19447 782 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 HUNKP57058 714 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 MTMR1Q13613 665 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 KCNB1Q14721 858 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 CNNM4Q6P4Q7 775 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 NCAPG2Q86XI2 1143 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 CATSPER3Q86XQ3 398 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 TEKT3Q9BXF9 490 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 TRIM9Q9C026 710 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 LRRC27Q9C0I9 530 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 LCTP09848 1927 aa15.81■□□□□ 0.12
SS18-201ENST00000269137 BECN2A8MW95 431 aa15.8■□□□□ 0.12
SS18-201ENST00000269137 PDHXO00330 501 aa15.8■□□□□ 0.12
SS18-201ENST00000269137 EML1O00423 815 aa15.8■□□□□ 0.12
SS18-201ENST00000269137 IKBKBO14920 756 aa15.8■□□□□ 0.12
SS18-201ENST00000269137 MAFGO15525 162 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms