RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	RME1	P32338	300 aa	Known RBP	4.75	□□□□□ -1.65
RRP40	YOL142W	MIC60	P36112	540 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	UIP5	P36137	443 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	FMP46	P36141	133 aa	Known RBP	4.75	□□□□□ -1.65
RRP40	YOL142W	SIP3	P38717	1229 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	YER130C	P39959	443 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	YJL070C	P40361	888 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	RSM23	Q01163	450 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	YKU80	Q04437	629 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	DPB4	Q04603	196 aa	Known RBP	4.75	□□□□□ -1.65
RRP40	YOL142W	YPL272C	Q08984	517 aa		4.75	□□□□□ -1.65
RRP40	YOL142W	SNA3	P14359	133 aa		4.74	□□□□□ -1.65
RRP40	YOL142W	KAR3	P17119	729 aa		4.74	□□□□□ -1.65
RRP40	YOL142W	SNC1	P31109	117 aa		4.74	□□□□□ -1.65
RRP40	YOL142W	SYN8	P31377	255 aa		4.74	□□□□□ -1.65
RRP40	YOL142W	ERG1	P32476	496 aa	Known RBP	4.74	□□□□□ -1.65
RRP40	YOL142W	AUR1	P36107	401 aa	Predicted RBP	4.74	□□□□□ -1.65
RRP40	YOL142W	ROT2	P38138	954 aa		4.74	□□□□□ -1.65
RRP40	YOL142W	CCT4	P39078	528 aa	Known RBP	4.74	□□□□□ -1.65
RRP40	YOL142W	YLH47	Q06493	454 aa		4.74	□□□□□ -1.65
RRP40	YOL142W	YDL057W	Q07379	328 aa		4.74	□□□□□ -1.65
RRP40	YOL142W	ARD1	P07347	238 aa	Predicted RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	TCP1	P12612	559 aa	Known RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	KGD1	P20967	1014 aa	Known RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	MTR2	P34232	184 aa	Known RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	YKT6	P36015	200 aa	Known RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	MUD2	P36084	527 aa	Known RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	YEL068C	P39977	110 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	VTC2	P43585	828 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	CAF130	P53280	1122 aa	Predicted RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	EFM6	P53970	246 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	ARK1	P53974	638 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	MSS11	Q03825	758 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	COQ9	Q05779	260 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	SSK1	Q07084	712 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	ETT1	Q08421	412 aa	Known RBP	4.73	□□□□□ -1.65
RRP40	YOL142W	DAP1	Q12091	152 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	RTP1	Q12751	981 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	YMR230W-A	Q3E7B5	62 aa		4.73	□□□□□ -1.65
RRP40	YOL142W	PHO2	P07269	559 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	PMS1	P14242	873 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	ROX1	P25042	368 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	RPS2	P25443	254 aa	Known RBP	4.72	□□□□□ -1.65
RRP40	YOL142W	PUP3	P25451	205 aa	Known RBP	4.72	□□□□□ -1.65
RRP40	YOL142W	ACH1	P32316	526 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	LAG1	P38703	411 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	AXL1	P40851	1208 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	TDA7	P53882	636 aa	Predicted RBP	4.72	□□□□□ -1.65
RRP40	YOL142W	CRZ1	P53968	678 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	YVH1	Q02256	364 aa	Known RBP	4.72	□□□□□ -1.65
RRP40	YOL142W	VPS72	Q03388	795 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	YMR160W	Q03823	816 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	YTH1	Q06102	208 aa	Predicted RBP	4.72	□□□□□ -1.65
RRP40	YOL142W	FMP45	Q07651	309 aa		4.72	□□□□□ -1.65
RRP40	YOL142W	YML002W	P0CF17	737 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	TYR1	P20049	452 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	YCK1	P23291	538 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	BUD5	P25300	642 aa	Predicted RBP	4.71	□□□□□ -1.66
RRP40	YOL142W	RPN12	P32496	274 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	YKL100C	P34248	587 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	YBL029W	P38201	376 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	YJL068C	P40363	299 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	PTR3	P43606	678 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	FAR3	P46671	204 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	AZR1	P50080	613 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	YGR127W	P53275	312 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	NCS2	P53923	493 aa	Predicted RBP	4.71	□□□□□ -1.66
RRP40	YOL142W	DIC1	Q06143	298 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	CUR1	Q06469	252 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	SMC5	Q08204	1093 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	SPE4	Q12455	300 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	YDR524C-B	Q3E6R4	66 aa		4.71	□□□□□ -1.66
RRP40	YOL142W	POL4	P25615	582 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
RRP40	YOL142W	YSC83	P32792	385 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	COT1	P32798	439 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	YBL055C	P34220	418 aa	Predicted RBP	4.7	□□□□□ -1.66
RRP40	YOL142W	RRP3	P38712	501 aa	Known RBP	4.7	□□□□□ -1.66
RRP40	YOL142W	TVP23	P38962	199 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	RSM25	P40496	264 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	DIM1	P41819	318 aa	Known RBP	4.7	□□□□□ -1.66
RRP40	YOL142W	NBP1	P52919	319 aa	Predicted RBP	4.7	□□□□□ -1.66
RRP40	YOL142W	RTT102	P53330	157 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	SMM1	P53720	384 aa	Known RBP	4.7	□□□□□ -1.66
RRP40	YOL142W	YPL014W	Q02606	381 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	BUD22	Q04347	519 aa	Known RBP	4.7	□□□□□ -1.66
RRP40	YOL142W	IES4	Q08561	116 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	PDH1	Q12428	516 aa	Known RBP	4.7	□□□□□ -1.66
RRP40	YOL142W	YBR126W-A	Q8TGU7	68 aa		4.7	□□□□□ -1.66
RRP40	YOL142W	MF(ALPHA)1	P01149	165 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	PDA1	P16387	420 aa	Known RBP	4.69	□□□□□ -1.66
RRP40	YOL142W	BOS1	P25385	244 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	RPC53	P25441	422 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	IMG1	P25626	169 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	YIH1	P25637	258 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	CMK1	P27466	446 aa	Known RBP	4.69	□□□□□ -1.66
RRP40	YOL142W	YFL040W	P43562	540 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	AIP1	P46680	615 aa	Known RBP	4.69	□□□□□ -1.66
RRP40	YOL142W	APT1	P49435	187 aa	Known RBP	4.69	□□□□□ -1.66
RRP40	YOL142W	LCL3	P53153	274 aa		4.69	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms