RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C GPH1P06738 902 aaKnown RBP4.75□□□□□ -1.65
NUP116YMR047C CLN2P20438 545 aa4.75□□□□□ -1.65
NUP116YMR047C MLS1P30952 554 aa4.75□□□□□ -1.65
NUP116YMR047C NTH1P32356 751 aa4.75□□□□□ -1.65
NUP116YMR047C IMP3P32899 183 aaPredicted RBP4.75□□□□□ -1.65
NUP116YMR047C STP2P38704 541 aa4.75□□□□□ -1.65
NUP116YMR047C GND1P38720 489 aaKnown RBP4.75□□□□□ -1.65
NUP116YMR047C POP2P39008 433 aa4.75□□□□□ -1.65
NUP116YMR047C ATM1P40416 690 aa4.75□□□□□ -1.65
NUP116YMR047C AXL1P40851 1208 aa4.75□□□□□ -1.65
NUP116YMR047C ABM1P47146 123 aa4.75□□□□□ -1.65
NUP116YMR047C COG7P53195 279 aa4.75□□□□□ -1.65
NUP116YMR047C RCF2P53721 224 aa4.75□□□□□ -1.65
NUP116YMR047C ACS1Q01574 713 aa4.75□□□□□ -1.65
NUP116YMR047C REC102Q02721 264 aa4.75□□□□□ -1.65
NUP116YMR047C RGC1Q06108 1083 aaKnown RBP4.75□□□□□ -1.65
NUP116YMR047C YLR456WQ06199 204 aa4.75□□□□□ -1.65
NUP116YMR047C YLL032CQ07834 825 aaKnown RBP RIP-Chip data4.75□□□□□ -1.65not detected
NUP116YMR047C DIA2Q08496 732 aaPredicted RBP4.75□□□□□ -1.65
NUP116YMR047C GUP2Q08929 609 aa4.75□□□□□ -1.65
NUP116YMR047C MED2Q12124 431 aa4.75□□□□□ -1.65
NUP116YMR047C ERR1P0CX10 437 aa4.75□□□□□ -1.65
NUP116YMR047C ERR2P0CX11 437 aa4.75□□□□□ -1.65
NUP116YMR047C RPT5P33297 434 aaKnown RBP4.75□□□□□ -1.65
NUP116YMR047C CNS1P33313 385 aa4.75□□□□□ -1.65
NUP116YMR047C LDB7P38210 180 aa4.75□□□□□ -1.65
NUP116YMR047C YHR219WP38900 624 aa4.75□□□□□ -1.65
NUP116YMR047C ERR3P42222 437 aa4.75□□□□□ -1.65
NUP116YMR047C RGD2P43556 714 aa4.75□□□□□ -1.65
NUP116YMR047C NAS6P50086 228 aa4.75□□□□□ -1.65
NUP116YMR047C RUB1Q03919 77 aa4.75□□□□□ -1.65
NUP116YMR047C PHO92Q06390 306 aa4.75□□□□□ -1.65
NUP116YMR047C MHR1Q06630 226 aa4.75□□□□□ -1.65
NUP116YMR047C SIR3P06701 978 aa4.74□□□□□ -1.65
NUP116YMR047C RPC40P07703 335 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C STE12P13574 688 aa4.74□□□□□ -1.65
NUP116YMR047C HEM3P28789 327 aa4.74□□□□□ -1.65
NUP116YMR047C NTG1P31378 399 aa4.74□□□□□ -1.65
NUP116YMR047C FUN26P31381 517 aa4.74□□□□□ -1.65
NUP116YMR047C SUR1P33300 382 aa4.74□□□□□ -1.65
NUP116YMR047C YMR134WP40207 237 aa4.74□□□□□ -1.65
NUP116YMR047C MDJ2P42834 146 aa4.74□□□□□ -1.65
NUP116YMR047C YJR141WP47172 347 aaPredicted RBP4.74□□□□□ -1.65
NUP116YMR047C DBP6P53734 629 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C ERV25P54837 211 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C SOV1Q04748 898 aa4.74□□□□□ -1.65
NUP116YMR047C SPC2Q04969 178 aa4.74□□□□□ -1.65
NUP116YMR047C YPL278CQ08990 100 aa4.74□□□□□ -1.65
NUP116YMR047C RTR2Q12378 196 aa4.74□□□□□ -1.65
NUP116YMR047C YGL041W-AP0C5N3 154 aa4.74□□□□□ -1.65
NUP116YMR047C SBA1P28707 216 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C LST4P34239 828 aa4.74□□□□□ -1.65
NUP116YMR047C HXT6P39003 570 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C HXT7P39004 570 aa4.74□□□□□ -1.65
NUP116YMR047C SCC4P40090 624 aa4.74□□□□□ -1.65
NUP116YMR047C PDS1P40316 373 aaPredicted RBP4.74□□□□□ -1.65
NUP116YMR047C SSU1P41930 458 aa4.74□□□□□ -1.65
NUP116YMR047C NRM1P53718 249 aa4.74□□□□□ -1.65
NUP116YMR047C YDR179W-AQ03983 463 aa4.74□□□□□ -1.65
NUP116YMR047C BNA7Q04066 261 aa4.74□□□□□ -1.65
NUP116YMR047C YML096WQ04489 525 aa4.74□□□□□ -1.65
NUP116YMR047C TGS1Q12052 315 aa4.74□□□□□ -1.65
NUP116YMR047C RMD5Q12508 421 aa4.74□□□□□ -1.65
NUP116YMR047C LRP1P38801 184 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C YJR056CP47115 236 aa4.74□□□□□ -1.65
NUP116YMR047C NNF1P47149 201 aa4.74□□□□□ -1.65
NUP116YMR047C BPL1P48445 690 aaPredicted RBP4.74□□□□□ -1.65
NUP116YMR047C MNN10P50108 393 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C PRO2P54885 456 aaKnown RBP4.74□□□□□ -1.65
NUP116YMR047C GPN3Q06543 272 aa4.74□□□□□ -1.65
NUP116YMR047C SMF3Q12078 473 aaPredicted RBP4.74□□□□□ -1.65
NUP116YMR047C YIL046W-AQ3E7Z4 54 aa4.74□□□□□ -1.65
NUP116YMR047C RPL24AP04449 155 aaKnown RBP4.73□□□□□ -1.65
NUP116YMR047C AIM26P32858 118 aa4.73□□□□□ -1.65
NUP116YMR047C TAF14P35189 244 aa4.73□□□□□ -1.65
NUP116YMR047C GLG1P36143 616 aa4.73□□□□□ -1.65
NUP116YMR047C CGR1P53188 120 aa4.73□□□□□ -1.65
NUP116YMR047C CUE5Q08412 411 aaKnown RBP4.73□□□□□ -1.65
NUP116YMR047C CBC2Q08920 208 aaKnown RBP RIP-Chip data4.73□□□□□ -1.65not detected
NUP116YMR047C GLO4Q12320 285 aa4.73□□□□□ -1.65
NUP116YMR047C ARG3P05150 338 aa4.73□□□□□ -1.65
NUP116YMR047C FUR1P18562 216 aaKnown RBP4.73□□□□□ -1.65
NUP116YMR047C EPT1P22140 391 aa4.73□□□□□ -1.65
NUP116YMR047C CLB2P24869 491 aa4.73□□□□□ -1.65
NUP116YMR047C YKL100CP34248 587 aa4.73□□□□□ -1.65
NUP116YMR047C POP4P38336 279 aa4.73□□□□□ -1.65
NUP116YMR047C YIL108WP40483 696 aaKnown RBP4.73□□□□□ -1.65
NUP116YMR047C GTS1P40956 396 aa4.73□□□□□ -1.65
NUP116YMR047C YNR068CP53754 272 aa4.73□□□□□ -1.65
NUP116YMR047C PET117Q02771 107 aa4.73□□□□□ -1.65
NUP116YMR047C SSY1Q03770 852 aa4.73□□□□□ -1.65
NUP116YMR047C RQC1Q05468 723 aaKnown RBP4.73□□□□□ -1.65
NUP116YMR047C SPO77Q06134 477 aa4.73□□□□□ -1.65
NUP116YMR047C CDC73Q06697 393 aa4.73□□□□□ -1.65
NUP116YMR047C YLR030WQ07967 263 aa4.73□□□□□ -1.65
NUP116YMR047C SNU23Q12368 194 aaPredicted RBP4.73□□□□□ -1.65
NUP116YMR047C YCL001W-BQ96VH2 84 aa4.73□□□□□ -1.65
NUP116YMR047C CMD1P06787 147 aaKnown RBP4.72□□□□□ -1.65
NUP116YMR047C SSH4P32343 579 aa4.72□□□□□ -1.65
NUP116YMR047C WBP1P33767 430 aaKnown RBP4.72□□□□□ -1.65
Retrieved 100 of 5,963 RNA–protein pairs in 28.1 ms