RNA–Protein interactions for RNA: YLL040C

VPS13, Transcript of Protein involved in prospore membrane morphogenesis, yeastyeast

Gene VPS13, Length 9,435 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS13YLL040C GCN4P03069 281 aa2.31□□□□□ -2.04
VPS13YLL040C NSP1P14907 823 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C MIH1P23748 554 aa2.31□□□□□ -2.04
VPS13YLL040C ATO2P32907 282 aa2.31□□□□□ -2.04
VPS13YLL040C YER184CP39961 794 aa2.31□□□□□ -2.04
VPS13YLL040C SMB1P40018 196 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C YJL218WP40892 196 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C MDE1P47095 244 aa2.31□□□□□ -2.04
VPS13YLL040C LUC7Q07508 261 aaPredicted RBP2.31□□□□□ -2.04
VPS13YLL040C MRN1Q08925 612 aaKnown RBP RIP-Chip data2.31□□□□□ -2.04not detected
VPS13YLL040C SPS1P08458 490 aa2.31□□□□□ -2.04
VPS13YLL040C POX1P13711 748 aa2.31□□□□□ -2.04
VPS13YLL040C SCO2P38072 301 aa2.31□□□□□ -2.04
VPS13YLL040C APN2P38207 520 aa2.31□□□□□ -2.04
VPS13YLL040C YPR091CQ06833 770 aa2.31□□□□□ -2.04
VPS13YLL040C YGR161W-CQ3E744 92 aa2.31□□□□□ -2.04
VPS13YLL040C CYC1P00044 109 aaPredicted RBP2.31□□□□□ -2.04
VPS13YLL040C RPS17AP02407 136 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C CAP2P13517 287 aa2.31□□□□□ -2.04
VPS13YLL040C RPS17BP14127 136 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C GPX2P38143 162 aa2.31□□□□□ -2.04
VPS13YLL040C GND1P38720 489 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C IDP2P41939 412 aa2.31□□□□□ -2.04
VPS13YLL040C ELP2P42935 788 aa2.31□□□□□ -2.04
VPS13YLL040C YFR018CP43599 363 aa2.31□□□□□ -2.04
VPS13YLL040C EFM5P53200 248 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C NQM1P53228 333 aaPredicted RBP2.31□□□□□ -2.04
VPS13YLL040C BIO5P53744 561 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C EAR1Q03212 550 aa2.31□□□□□ -2.04
VPS13YLL040C NOP12Q08208 459 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C YOL131WQ08270 108 aa2.31□□□□□ -2.04
VPS13YLL040C TRE2Q08693 809 aa2.31□□□□□ -2.04
VPS13YLL040C YPL199CQ08954 240 aa2.31□□□□□ -2.04
VPS13YLL040C AEP3Q12089 606 aa2.31□□□□□ -2.04
VPS13YLL040C REV1P12689 985 aa2.31□□□□□ -2.04
VPS13YLL040C ADY2P25613 283 aa2.31□□□□□ -2.04
VPS13YLL040C PPZ1P26570 692 aa2.31□□□□□ -2.04
VPS13YLL040C ANR2P36090 516 aaPredicted RBP2.31□□□□□ -2.04
VPS13YLL040C YHR020WP38708 688 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C YEL028WP39989 153 aa2.31□□□□□ -2.04
VPS13YLL040C SUM1P46676 1062 aa2.31□□□□□ -2.04
VPS13YLL040C UTP8P53276 713 aaKnown RBP2.31□□□□□ -2.04
VPS13YLL040C GPI1P53306 609 aa2.31□□□□□ -2.04
VPS13YLL040C SRF1Q12516 437 aa2.31□□□□□ -2.04
VPS13YLL040C YOL163WP0CF20 169 aa2.3□□□□□ -2.04
VPS13YLL040C RPL3P14126 387 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C YBR056WP38081 501 aa2.3□□□□□ -2.04
VPS13YLL040C GGC1P38988 300 aa2.3□□□□□ -2.04
VPS13YLL040C DLD3P39976 496 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C YJL068CP40363 299 aa2.3□□□□□ -2.04
VPS13YLL040C RNH70P53331 553 aa2.3□□□□□ -2.04
VPS13YLL040C HST2P53686 357 aa2.3□□□□□ -2.04
VPS13YLL040C HPT1Q04178 221 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C THI20Q08224 551 aa2.3□□□□□ -2.04
VPS13YLL040C HXK2P04807 486 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C CDC31P06704 161 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C THR1P17423 357 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C VPS17P32913 551 aa2.3□□□□□ -2.04
VPS13YLL040C DOA1P36037 715 aa2.3□□□□□ -2.04
VPS13YLL040C IPI1P38803 334 aaPredicted RBP2.3□□□□□ -2.04
VPS13YLL040C NPT1P39683 429 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C YER158CP40095 573 aa2.3□□□□□ -2.04
VPS13YLL040C RCO1Q04779 684 aa2.3□□□□□ -2.04
VPS13YLL040C HRD3Q05787 833 aa2.3□□□□□ -2.04
VPS13YLL040C VPS74Q06385 345 aa2.3□□□□□ -2.04
VPS13YLL040C CBC2Q08920 208 aaKnown RBP RIP-Chip data2.3□□□□□ -2.04not detected
VPS13YLL040C OXR1Q08952 273 aa2.3□□□□□ -2.04
VPS13YLL040C MMP1Q12372 583 aa2.3□□□□□ -2.04
VPS13YLL040C SKM1Q12469 655 aa2.3□□□□□ -2.04
VPS13YLL040C LSO1Q3E827 93 aa2.3□□□□□ -2.04
VPS13YLL040C SIR3P06701 978 aa2.3□□□□□ -2.04
VPS13YLL040C LEU1P07264 779 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C YBR053CP38235 358 aa2.3□□□□□ -2.04
VPS13YLL040C DBP8P38719 431 aa2.3□□□□□ -2.04
VPS13YLL040C GTS1P40956 396 aa2.3□□□□□ -2.04
VPS13YLL040C YJL007CP47080 104 aa2.3□□□□□ -2.04
VPS13YLL040C AIF1P52923 378 aa2.3□□□□□ -2.04
VPS13YLL040C ASI2P53895 289 aa2.3□□□□□ -2.04
VPS13YLL040C YRR1Q12172 810 aa2.3□□□□□ -2.04
VPS13YLL040C YGK3Q12222 375 aaPredicted RBP2.3□□□□□ -2.04
VPS13YLL040C YLR149CQ99296 730 aa2.3□□□□□ -2.04
VPS13YLL040C CDC4P07834 779 aa2.3□□□□□ -2.04
VPS13YLL040C APA1P16550 321 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C FAA1P30624 700 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C IMP3P32899 183 aaPredicted RBP2.3□□□□□ -2.04
VPS13YLL040C TDP1P38319 544 aa2.3□□□□□ -2.04
VPS13YLL040C RIM4P38741 713 aa2.3□□□□□ -2.04
VPS13YLL040C PRP39P39682 629 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C SPO77Q06134 477 aa2.3□□□□□ -2.04
VPS13YLL040C YPQ2Q06328 317 aa2.3□□□□□ -2.04
VPS13YLL040C DIA2Q08496 732 aaPredicted RBP2.3□□□□□ -2.04
VPS13YLL040C ICT1Q12385 394 aa2.3□□□□□ -2.04
VPS13YLL040C STE12P13574 688 aa2.3□□□□□ -2.04
VPS13YLL040C MNE1P24720 663 aa2.3□□□□□ -2.04
VPS13YLL040C AAR2P32357 355 aaPredicted RBP2.3□□□□□ -2.04
VPS13YLL040C UGP1P32861 499 aaKnown RBP2.3□□□□□ -2.04
VPS13YLL040C PMT1P33775 817 aa2.3□□□□□ -2.04
VPS13YLL040C NIC96P34077 839 aa2.3□□□□□ -2.04
VPS13YLL040C YKR051WP36142 418 aa2.3□□□□□ -2.04
VPS13YLL040C UTP30P36144 274 aaKnown RBP2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms