RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	COS3	P0CX13	379 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	TOP3	P13099	656 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	RVS161	P25343	265 aa	Known RBP	5.87	□□□□□ -1.47
RPN11	YFR004W	SYP1	P25623	870 aa	Known RBP	5.87	□□□□□ -1.47
RPN11	YFR004W	CSM1	P25651	190 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	RPL5	P26321	297 aa	Known RBP	5.87	□□□□□ -1.47
RPN11	YFR004W	CIN8	P27895	1000 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	TIF3	P34167	436 aa	Known RBP	5.87	□□□□□ -1.47
RPN11	YFR004W	SKT5	P34226	696 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	ADD66	P36040	267 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	MAK5	P38112	773 aa	Predicted RBP	5.87	□□□□□ -1.47
RPN11	YFR004W	FUI1	P38196	639 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	APE4	P38821	490 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	CYC2	P38909	366 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	ACO2	P39533	789 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	RGI2	P40188	164 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	IAH1	P41734	238 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	COS4	P43542	379 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	YGL176C	P46945	554 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	PMT3	P47190	753 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	AMA1	P50082	593 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	IMA1	P53051	589 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	EFM5	P53200	248 aa	Known RBP	5.87	□□□□□ -1.47
RPN11	YFR004W	SNO2	P53823	222 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	GAS3	Q03655	524 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	YML096W	Q04489	525 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	YDR109C	Q04585	715 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	BNA5	Q05979	453 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	BLS1	Q06071	122 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	GMC2	Q06201	188 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	GIC2	Q06648	383 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	THI73	Q07904	523 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	YOL019W	Q08157	551 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	MUM3	Q08750	479 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	YLR049C	Q12110	428 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	GET4	Q12125	312 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	NSL1	Q12143	216 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	YLR149C	Q99296	730 aa		5.87	□□□□□ -1.47
RPN11	YFR004W	ARG81	P05085	880 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	HEM2	P05373	342 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	PMA2	P19657	947 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	DAL82	P21705	255 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	CNA1	P23287	553 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	DBR1	P24309	405 aa	Known RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	SPB1	P25582	841 aa	Predicted RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	PTP2	P29461	750 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	KAR9	P32526	644 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	IMP3	P32899	183 aa	Predicted RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	APM3	P38153	483 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	MUM2	P38236	366 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	EFM1	P38732	585 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	YIL108W	P40483	696 aa	Known RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	IST3	P40565	148 aa	Predicted RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	GCN20	P43535	752 aa	Known RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	CIS3	P47001	227 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	RMR1	P53060	241 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	AIM14	P53109	570 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	YNR063W	P53749	607 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	ORC3	P54790	616 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	TMA20	P89886	181 aa	Predicted RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	YML131W	Q03102	365 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	NHP10	Q03435	203 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	YMR226C	Q05016	267 aa	Known RBP	5.86	□□□□□ -1.47
RPN11	YFR004W	GGA1	Q06336	557 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	REH1	Q06709	432 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	YDR061W	Q12298	539 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	ICT1	Q12385	394 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	SAS5	Q99314	248 aa		5.86	□□□□□ -1.47
RPN11	YFR004W	ARG3	P05150	338 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	HTS1	P07263	546 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	BCY1	P07278	416 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	GUK1	P15454	187 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	POL30	P15873	258 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	PHO81	P17442	1178 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	RPT5	P33297	434 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	YKL107W	P34251	309 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	MDJ1	P35191	511 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	IST2	P38250	946 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	UBS1	P38290	277 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	SRP72	P38688	640 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	FAD1	P38913	306 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	FAA2	P39518	744 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	MET18	P40469	1032 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	CAB2	P40506	365 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	IMA5	P40884	581 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	SLS1	P42900	643 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	MPS3	P47069	682 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	EMC2	P47133	292 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	EMC4	P53073	190 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	COG7	P53195	279 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	CLD1	P53264	445 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	SPP2	Q02521	185 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	YDR179W-A	Q03983	463 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	RCO1	Q04779	684 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	DTD1	Q07648	150 aa	Known RBP	5.85	□□□□□ -1.47
RPN11	YFR004W	LOT6	Q07923	191 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	GPB1	Q08886	897 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	PEX11	Q12462	236 aa		5.85	□□□□□ -1.47
RPN11	YFR004W	UBR1	P19812	1950 aa		5.84	□□□□□ -1.47
RPN11	YFR004W	THP2	O13539	261 aa	Known RBP	5.84	□□□□□ -1.47

Retrieved 100 of 5,963 RNA–protein pairs in 9.8 ms