RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C MRE11P32829 692 aa2.58□□□□□ -2
SNU56YDR240C POP1P41812 875 aa2.58□□□□□ -2
SNU56YDR240C MRX6P48564 524 aa2.58□□□□□ -2
SNU56YDR240C TOF1P53840 1238 aa2.58□□□□□ -2
SNU56YDR240C MDG1P53885 366 aa2.58□□□□□ -2
SNU56YDR240C RPC11Q04307 110 aaPredicted RBP2.58□□□□□ -2
SNU56YDR240C MRPL35Q06678 367 aa2.58□□□□□ -2
SNU56YDR240C YDL007C-AQ2V2Q0 85 aa2.58□□□□□ -2
SNU56YDR240C RPL31BP0C2H9 113 aaKnown RBP2.58□□□□□ -2
SNU56YDR240C YAR066WP0CX18 203 aa2.58□□□□□ -2
SNU56YDR240C YHR214WP0CX19 203 aa2.58□□□□□ -2
SNU56YDR240C CLN3P13365 580 aa2.58□□□□□ -2
SNU56YDR240C CBS1P14066 229 aa2.58□□□□□ -2
SNU56YDR240C OLE1P21147 510 aaKnown RBP2.58□□□□□ -2
SNU56YDR240C GYP6P32806 458 aa2.58□□□□□ -2
SNU56YDR240C STB6P36085 766 aa2.58□□□□□ -2
SNU56YDR240C SWD3P38123 315 aa2.58□□□□□ -2
SNU56YDR240C ISC1P40015 477 aaKnown RBP2.58□□□□□ -2
SNU56YDR240C OCA1P50946 238 aaPredicted RBP2.58□□□□□ -2
SNU56YDR240C YMR027WQ04371 470 aa2.58□□□□□ -2
SNU56YDR240C RBD2Q12270 262 aa2.58□□□□□ -2
SNU56YDR240C SEC39Q12745 709 aa2.58□□□□□ -2
SNU56YDR240C PET123P17558 318 aa2.57□□□□□ -2
SNU56YDR240C RVS161P25343 265 aaKnown RBP2.57□□□□□ -2
SNU56YDR240C CDC60P26637 1090 aaKnown RBP2.57□□□□□ -2
SNU56YDR240C TMA108P40462 946 aa2.57□□□□□ -2
SNU56YDR240C SGN1P40561 250 aaKnown RBP RIP-Chip data2.57□□□□□ -2not detected
SNU56YDR240C CAF130P53280 1122 aaPredicted RBP2.57□□□□□ -2
SNU56YDR240C HER2Q03557 464 aa2.57□□□□□ -2
SNU56YDR240C IOC4Q04213 475 aa2.57□□□□□ -2
SNU56YDR240C YLL032CQ07834 825 aaKnown RBP RIP-Chip data2.57□□□□□ -2not detected
SNU56YDR240C PEP3P27801 918 aa2.56□□□□□ -2
SNU56YDR240C YMR147WP40218 223 aaKnown RBP2.56□□□□□ -2
SNU56YDR240C WWM1P43582 211 aaKnown RBP2.56□□□□□ -2
SNU56YDR240C TRS85P46944 698 aa2.56□□□□□ -2
SNU56YDR240C PET130P47065 347 aa2.56□□□□□ -2
SNU56YDR240C TIS11P47977 285 aa2.56□□□□□ -2
SNU56YDR240C UPF3P48412 387 aaKnown RBP2.56□□□□□ -2
SNU56YDR240C SHY1P53266 389 aa2.56□□□□□ -2
SNU56YDR240C HRI1Q05905 244 aaKnown RBP2.56□□□□□ -2
SNU56YDR240C MUM3Q08750 479 aa2.56□□□□□ -2
SNU56YDR240C ENT1Q12518 454 aa2.56□□□□□ -2
SNU56YDR240C FAB1P34756 2278 aa2.55□□□□□ -2
SNU56YDR240C ADH2P00331 348 aaKnown RBP2.55□□□□□ -2
SNU56YDR240C AAC3P18238 307 aa2.55□□□□□ -2
SNU56YDR240C DAL2P25335 343 aa2.55□□□□□ -2
SNU56YDR240C REC114P32841 428 aa2.55□□□□□ -2
SNU56YDR240C MST28P39552 234 aa2.55□□□□□ -2
SNU56YDR240C PRM5P40476 318 aa2.55□□□□□ -2
SNU56YDR240C MET28P40573 187 aa2.55□□□□□ -2
SNU56YDR240C GOR1P53839 350 aa2.55□□□□□ -2
SNU56YDR240C VPS75P53853 264 aa2.55□□□□□ -2
SNU56YDR240C NCS2P53923 493 aaPredicted RBP2.55□□□□□ -2
SNU56YDR240C PDS5Q04264 1277 aa2.55□□□□□ -2
SNU56YDR240C RAD61Q99359 647 aa2.55□□□□□ -2
SNU56YDR240C FOB1O13329 566 aa2.54□□□□□ -2
SNU56YDR240C GCN4P03069 281 aa2.54□□□□□ -2
SNU56YDR240C RHO2P06781 192 aa2.54□□□□□ -2
SNU56YDR240C OCA4P25366 362 aa2.54□□□□□ -2
SNU56YDR240C PIM1P36775 1133 aa2.54□□□□□ -2
SNU56YDR240C YBR225WP38321 900 aa2.54□□□□□ -2
SNU56YDR240C KEL1P38853 1164 aaKnown RBP2.54□□□□□ -2
SNU56YDR240C OST1P41543 476 aaKnown RBP2.54□□□□□ -2
SNU56YDR240C YGL108CP53139 140 aa2.54□□□□□ -2
SNU56YDR240C RSN1Q03516 953 aa2.54□□□□□ -2
SNU56YDR240C YDR056CQ12025 205 aa2.54□□□□□ -2
SNU56YDR240C SAM1P10659 382 aaKnown RBP2.53□□□□□ -2
SNU56YDR240C SAM2P19358 384 aaKnown RBP2.53□□□□□ -2
SNU56YDR240C SEC66P33754 206 aa2.53□□□□□ -2
SNU56YDR240C PAN6P40459 309 aa2.53□□□□□ -2
SNU56YDR240C RMD8P43620 662 aa2.53□□□□□ -2
SNU56YDR240C TWF1P53250 332 aa2.53□□□□□ -2
SNU56YDR240C WTM1Q12363 437 aaKnown RBP2.53□□□□□ -2
SNU56YDR240C YCR041WP37265 110 aa2.52□□□□□ -2.01
SNU56YDR240C RIB5P38145 238 aa2.52□□□□□ -2.01
SNU56YDR240C CST26P38226 397 aa2.52□□□□□ -2.01
SNU56YDR240C YIP1P53039 248 aa2.52□□□□□ -2.01
SNU56YDR240C YMR181CQ03231 154 aa2.52□□□□□ -2.01
SNU56YDR240C TAP42Q04372 366 aa2.52□□□□□ -2.01
SNU56YDR240C FDH1Q08911 376 aa2.52□□□□□ -2.01
SNU56YDR240C PKH2Q12236 1081 aaKnown RBP2.52□□□□□ -2.01
SNU56YDR240C ATP10P18496 279 aa2.52□□□□□ -2.01
SNU56YDR240C TIP1P27654 210 aaPredicted RBP2.52□□□□□ -2.01
SNU56YDR240C LAM5P43560 674 aa2.52□□□□□ -2.01
SNU56YDR240C NCA3P46955 337 aa2.52□□□□□ -2.01
SNU56YDR240C RMD9P53140 646 aaKnown RBP2.52□□□□□ -2.01
SNU56YDR240C PEX25Q02969 394 aa2.52□□□□□ -2.01
SNU56YDR240C MRD1Q06106 887 aaKnown RBP2.52□□□□□ -2.01
SNU56YDR240C RRD2Q12461 358 aa2.52□□□□□ -2.01
SNU56YDR240C CCH1P50077 2039 aa2.51□□□□□ -2.01
SNU56YDR240C RAD14P28519 371 aa2.51□□□□□ -2.01
SNU56YDR240C CMC1P36064 111 aa2.51□□□□□ -2.01
SNU56YDR240C VID27P40157 782 aa2.51□□□□□ -2.01
SNU56YDR240C TFG2P41896 400 aaPredicted RBP2.51□□□□□ -2.01
SNU56YDR240C ECM27P47144 725 aa2.51□□□□□ -2.01
SNU56YDR240C DSL1P53847 754 aa2.51□□□□□ -2.01
SNU56YDR240C GIR2Q03768 265 aaPredicted RBP2.51□□□□□ -2.01
SNU56YDR240C YDR239CQ03780 787 aa2.51□□□□□ -2.01
SNU56YDR240C TIM18Q08749 192 aa2.51□□□□□ -2.01
SNU56YDR240C LSB5P25369 354 aa2.5□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 30.9 ms