RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	TRX2	P22803	104 aa	Known RBP	0.75	□□□□□ -2.29
PRP42	YDR235W	SHP1	P34223	423 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	BNA4	P38169	460 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	TCM62	P38228	572 aa	Known RBP	0.75	□□□□□ -2.29
PRP42	YDR235W	UTP18	P40362	594 aa	Predicted RBP	0.75	□□□□□ -2.29
PRP42	YDR235W	MEP3	P53390	489 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	MDG1	P53885	366 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	TOF2	Q02208	771 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	ECM11	Q04110	302 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	SPE4	Q12455	300 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	YBR126W-A	Q8TGU7	68 aa		0.75	□□□□□ -2.29
PRP42	YDR235W	TRP1	P00912	224 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	MES1	P00958	751 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	CDC16	P09798	840 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	SSH4	P32343	579 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	MFT1	P33441	392 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	MUD2	P36084	527 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	YBR225W	P38321	900 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	MSR1	P38714	643 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	ALG5	P40350	334 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	SSU1	P41930	458 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	ALK1	P43633	760 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	VID30	P53076	958 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	DUO1	P53168	247 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	ZPR1	P53303	486 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	MTM1	P53320	366 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	HST1	P53685	503 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	CWC25	P53854	179 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	ODC1	Q03028	310 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	NGL3	Q03210	505 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	COQ9	Q05779	260 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	OPY2	Q06810	360 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	YPL272C	Q08984	517 aa		0.74	□□□□□ -2.29
PRP42	YDR235W	NOP58	Q12499	511 aa	Known RBP	0.74	□□□□□ -2.29
PRP42	YDR235W	SEC53	P07283	254 aa	Known RBP	0.73	□□□□□ -2.29
PRP42	YDR235W	SPS22	P25380	463 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	YCR100C	P25606	316 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	DPB3	P27344	201 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	PAP1	P29468	568 aa	Known RBP	0.73	□□□□□ -2.29
PRP42	YDR235W	MCM10	P32354	571 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	TCD2	P36101	447 aa	Known RBP	0.73	□□□□□ -2.29
PRP42	YDR235W	MRPS9	P38120	278 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	REG2	P38232	338 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	AIM22	P47051	409 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	IMD4	P50094	524 aa	Known RBP	0.73	□□□□□ -2.29
PRP42	YDR235W	HEF3	P53978	1044 aa	Known RBP	0.73	□□□□□ -2.29
PRP42	YDR235W	IOC4	Q04213	475 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	YEH1	Q07804	573 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	IRC25	Q07951	179 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	RLM1	Q12224	676 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	ENT1	Q12518	454 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	YPT6	Q99260	215 aa		0.73	□□□□□ -2.29
PRP42	YDR235W	GAL80	P04387	435 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	COR1	P07256	457 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	ELO2	P25358	347 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	PEP3	P27801	918 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	CCT6	P39079	546 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	TIM17	P39515	158 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	FLC2	P39719	783 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	ISC1	P40015	477 aa	Known RBP	0.72	□□□□□ -2.29
PRP42	YDR235W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	0.72	□□□□□ -2.29	not detected
PRP42	YDR235W	POP1	P41812	875 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	HXT11	P54862	567 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	MRP51	Q02950	344 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	VPS38	Q05919	439 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	RCN2	Q12044	265 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	NMD4	Q12129	218 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	AVL9	Q12500	764 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	BRR1	Q99177	341 aa	Predicted RBP	0.72	□□□□□ -2.29
PRP42	YDR235W	RAD61	Q99359	647 aa		0.72	□□□□□ -2.29
PRP42	YDR235W	YAR066W	P0CX18	203 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	YHR214W	P0CX19	203 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	CBS1	P14066	229 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	HSC82	P15108	705 aa	Known RBP	0.71	□□□□□ -2.3
PRP42	YDR235W	AAC3	P18238	307 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	PRP2	P20095	876 aa	Predicted RBP	0.71	□□□□□ -2.3
PRP42	YDR235W	POP5	P28005	173 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	ATP11	P32453	318 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	NPL6	P32832	435 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	RIB5	P38145	238 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	RCK2	P38623	610 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	MBB1	P39534	108 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	ERP2	P39704	215 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	AIM10	P39965	576 aa	Known RBP	0.71	□□□□□ -2.3
PRP42	YDR235W	VID27	P40157	782 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	DOT5	P40553	215 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	TRS85	P46944	698 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	MRX6	P48564	524 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	YGR066C	P53242	292 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	CAF130	P53280	1122 aa	Predicted RBP	0.71	□□□□□ -2.3
PRP42	YDR235W	FIN1	Q03898	291 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	CTI6	Q08923	506 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	YJR112W-A	Q3E743	109 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	PSK1	P31374	1356 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	RAV1	P47104	1357 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	FOB1	O13329	566 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	SEM1	O94742	89 aa		0.71	□□□□□ -2.3
PRP42	YDR235W	LEU4	P06208	619 aa	Known RBP	0.71	□□□□□ -2.3
PRP42	YDR235W	RPL31B	P0C2H9	113 aa	Known RBP	0.71	□□□□□ -2.3
PRP42	YDR235W	WBP1	P33767	430 aa	Known RBP	0.71	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 22.8 ms