RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W FYV8P46949 817 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W BUL1P48524 976 aa1.18□□□□□ -2.22
CDC39YCR093W LSC1P53598 329 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W MRP51Q02950 344 aa1.18□□□□□ -2.22
CDC39YCR093W NUP53Q03790 475 aa1.18□□□□□ -2.22
CDC39YCR093W GYL1Q04322 720 aa1.18□□□□□ -2.22
CDC39YCR093W ATG26Q06321 1198 aa1.18□□□□□ -2.22
CDC39YCR093W GAL80P04387 435 aa1.18□□□□□ -2.22
CDC39YCR093W YME2P32843 850 aa1.18□□□□□ -2.22
CDC39YCR093W PHD1P36093 366 aa1.18□□□□□ -2.22
CDC39YCR093W PCA1P38360 1216 aa1.18□□□□□ -2.22
CDC39YCR093W COX14P39103 70 aa1.18□□□□□ -2.22
CDC39YCR093W YAT2P40017 923 aa1.18□□□□□ -2.22
CDC39YCR093W IMD4P50094 524 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W MMT1Q03218 510 aa1.18□□□□□ -2.22
CDC39YCR093W BET5Q03630 159 aa1.18□□□□□ -2.22
CDC39YCR093W HRD3Q05787 833 aa1.18□□□□□ -2.22
CDC39YCR093W AAD15Q08361 143 aa1.18□□□□□ -2.22
CDC39YCR093W DSE3Q08729 430 aa1.18□□□□□ -2.22
CDC39YCR093W FRE7Q12333 620 aa1.18□□□□□ -2.22
CDC39YCR093W PCL9Q12477 304 aa1.18□□□□□ -2.22
CDC39YCR093W RGS2Q99188 309 aa1.18□□□□□ -2.22
CDC39YCR093W TAD3Q9URQ3 322 aa1.18□□□□□ -2.22
CDC39YCR093W AQY1P0CD91 305 aa1.18□□□□□ -2.22
CDC39YCR093W AAC3P18238 307 aa1.18□□□□□ -2.22
CDC39YCR093W APE2P32454 952 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W COX13P32799 129 aa1.18□□□□□ -2.22
CDC39YCR093W TCD2P36101 447 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W KAP104P38217 918 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W FLO5P38894 1075 aa1.18□□□□□ -2.22
CDC39YCR093W HAC1P41546 238 aa1.18□□□□□ -2.22
CDC39YCR093W IKS1P47042 667 aa1.18□□□□□ -2.22
CDC39YCR093W RSM23Q01163 450 aa1.18□□□□□ -2.22
CDC39YCR093W MTR10Q99189 972 aa1.18□□□□□ -2.22
CDC39YCR093W URA4P20051 364 aa1.18□□□□□ -2.22
CDC39YCR093W MUD2P36084 527 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W MRX6P48564 524 aa1.18□□□□□ -2.22
CDC39YCR093W CAF130P53280 1122 aaPredicted RBP1.18□□□□□ -2.22
CDC39YCR093W SLU7Q02775 382 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W YDR341CQ05506 607 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W YLL056CQ12177 298 aa1.18□□□□□ -2.22
CDC39YCR093W MEX67Q99257 599 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W POL1P13382 1468 aa1.18□□□□□ -2.22
CDC39YCR093W ECM32P32644 1121 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W PMT1P33775 817 aa1.18□□□□□ -2.22
CDC39YCR093W PES4P39684 611 aa1.18□□□□□ -2.22
CDC39YCR093W SNL1P40548 159 aa1.18□□□□□ -2.22
CDC39YCR093W AIP1P46680 615 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W CRZ1P53968 678 aa1.18□□□□□ -2.22
CDC39YCR093W YMR155WQ03795 547 aa1.18□□□□□ -2.22
CDC39YCR093W YFH1Q07540 174 aa1.18□□□□□ -2.22
CDC39YCR093W SMC5Q08204 1093 aa1.18□□□□□ -2.22
CDC39YCR093W YOL087CQ99247 1116 aa1.18□□□□□ -2.22
CDC39YCR093W FKS3Q04952 1785 aa1.17□□□□□ -2.22
CDC39YCR093W NDC1P32500 655 aa1.17□□□□□ -2.22
CDC39YCR093W MPE1P35728 441 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W LYS1P38998 373 aaRIP-Chip data1.17□□□□□ -2.22not detected
CDC39YCR093W MMF1P40185 145 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W YIL089WP40500 205 aa1.17□□□□□ -2.22
CDC39YCR093W FET5P43561 622 aa1.17□□□□□ -2.22
CDC39YCR093W SAE2P46946 345 aa1.17□□□□□ -2.22
CDC39YCR093W HER2Q03557 464 aa1.17□□□□□ -2.22
CDC39YCR093W MGR3Q04472 501 aa1.17□□□□□ -2.22
CDC39YCR093W YPT6Q99260 215 aa1.17□□□□□ -2.22
CDC39YCR093W HIP1P06775 603 aa1.17□□□□□ -2.22
CDC39YCR093W ARF1P11076 181 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W GLK1P17709 500 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W YJU2P28320 278 aaPredicted RBP1.17□□□□□ -2.22
CDC39YCR093W YHR182WP38870 785 aa1.17□□□□□ -2.22
CDC39YCR093W GPD2P41911 440 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W YGL108CP53139 140 aa1.17□□□□□ -2.22
CDC39YCR093W TDA7P53882 636 aaPredicted RBP1.17□□□□□ -2.22
CDC39YCR093W PIG1Q06216 648 aa1.17□□□□□ -2.22
CDC39YCR093W YDL057WQ07379 328 aa1.17□□□□□ -2.22
CDC39YCR093W PIS1P06197 220 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W ATR1P13090 542 aa1.17□□□□□ -2.22
CDC39YCR093W ROX1P25042 368 aa1.17□□□□□ -2.22
CDC39YCR093W POL4P25615 582 aa1.17□□□□□ -2.22
CDC39YCR093W FRE2P36033 711 aa1.17□□□□□ -2.22
CDC39YCR093W PIM1P36775 1133 aa1.17□□□□□ -2.22
CDC39YCR093W TDA11P38854 504 aa1.17□□□□□ -2.22
CDC39YCR093W MET18P40469 1032 aa1.17□□□□□ -2.22
CDC39YCR093W CIN1P40987 1014 aa1.17□□□□□ -2.22
CDC39YCR093W AQR1P53943 586 aa1.17□□□□□ -2.22
CDC39YCR093W ARP5P53946 755 aa1.17□□□□□ -2.22
CDC39YCR093W RTT103Q05543 409 aa1.17□□□□□ -2.22
CDC39YCR093W RAD34Q06665 692 aa1.17□□□□□ -2.22
CDC39YCR093W NRT1Q08485 598 aa1.17□□□□□ -2.22
CDC39YCR093W SAM1P10659 382 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W TRX1P22217 103 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W MNE1P24720 663 aa1.17□□□□□ -2.22
CDC39YCR093W PHO84P25297 587 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W ITR2P30606 609 aa1.17□□□□□ -2.22
CDC39YCR093W ERG1P32476 496 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W WBP1P33767 430 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W YHR210CP38893 341 aa1.17□□□□□ -2.22
CDC39YCR093W YER079WP40052 210 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W DPH1P40487 425 aaKnown RBP1.17□□□□□ -2.22
CDC39YCR093W PAC11P40960 533 aa1.17□□□□□ -2.22
CDC39YCR093W AZF1P41696 914 aa1.17□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms