RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 VPS54Q9P1Q0 977 aa20.74■□□□□ 0.91
CLN3-239ENST00000628023 ORC3Q9UBD5 711 aaPredicted RBP20.74■□□□□ 0.91
CLN3-239ENST00000628023 DTNBO60941 627 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 CTDNEP1O95476 244 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 ZNF865P0CJ78 1059 aaPredicted RBP20.73■□□□□ 0.91
CLN3-239ENST00000628023 EDNRBP24530 442 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 LRRC41Q15345 812 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 RNF180Q86T96 592 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 DEFB123Q8N688 67 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 NSUN7Q8NE18 718 aaKnown RBP20.73■□□□□ 0.91
CLN3-239ENST00000628023 MORC4Q8TE76 937 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 WASF1Q92558 559 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 EHMT1Q9H9B1 1298 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 FAM184BQ9ULE4 1060 aa20.73■□□□□ 0.91
CLN3-239ENST00000628023 DNAH12Q6ZR08 3092 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 ESYT2A0FGR8 921 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 MYCLP12524 364 aaPredicted RBP20.72■□□□□ 0.91
CLN3-239ENST00000628023 XBP1P17861 261 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 GNA11P29992 359 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 ADCYAP1R1P41586 468 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 NLRP5P59047 1200 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 STXBP2Q15833 593 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 CCDC144BQ3MJ40 725 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 AIFM3Q96NN9 605 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 PDCD2LQ9BRP1 358 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 SH3GLB2Q9NR46 395 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 LRRC37A2A6NM11 1700 aa20.72■□□□□ 0.91
CLN3-239ENST00000628023 JAK2O60674 1132 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 CD2BP2O95400 341 aaKnown RBP20.71■□□□□ 0.91
CLN3-239ENST00000628023 NR3C2P08235 984 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 CCND2P30279 289 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 ST3GAL1Q11201 340 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 PGM5Q15124 567 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 TEX2Q8IWB9 1127 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 BICD2Q8TD16 824 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 FERMT2Q96AC1 680 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 LLPHQ9BRT6 129 aaKnown RBP20.71■□□□□ 0.91
CLN3-239ENST00000628023 ALG1Q9BT22 464 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 KATNBL1Q9H079 304 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 ZMYND12Q9H0C1 365 aa20.71■□□□□ 0.91
CLN3-239ENST00000628023 REXO1Q8N1G1 1221 aaKnown RBP20.7■□□□□ 0.9
CLN3-239ENST00000628023 LENG1Q96BZ8 264 aaPredicted RBP20.7■□□□□ 0.9
CLN3-239ENST00000628023 PRDM5Q9NQX1 630 aaPredicted RBP20.7■□□□□ 0.9
CLN3-239ENST00000628023 PCDHA6Q9UN73 950 aa20.7■□□□□ 0.9
CLN3-239ENST00000628023 PCDHA8Q9Y5H6 950 aa20.7■□□□□ 0.9
CLN3-239ENST00000628023 LAMA3Q16787 3333 aa20.7■□□□□ 0.9
CLN3-239ENST00000628023 FOSP01100 380 aaPredicted RBP20.69■□□□□ 0.9
CLN3-239ENST00000628023 AP3B2Q13367 1082 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 C1orf53Q5VUE5 145 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 SEPT14Q6ZU15 432 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 SLC17A8Q8NDX2 589 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 IL31RAQ8NI17 732 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 TMX3Q96JJ7 454 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 PDGFCQ9NRA1 345 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 PHF24Q9UPV7 400 aa20.69■□□□□ 0.9
CLN3-239ENST00000628023 EIF3JO75822 258 aaKnown RBP20.68■□□□□ 0.9
CLN3-239ENST00000628023 FOSBP53539 338 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 TNFAIP2Q03169 654 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 SNX17Q15036 470 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 TRIM60Q495X7 471 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 JAKMIP3Q5VZ66 844 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 TAPT1Q6NXT6 567 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 SCFD2Q8WU76 684 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 PGBD1Q96JS3 809 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 ANO3Q9BYT9 981 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 TMEM260Q9NX78 707 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 FRMPD4Q14CM0 1322 aa20.68■□□□□ 0.9
CLN3-239ENST00000628023 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.67■□□□□ 0.9
CLN3-239ENST00000628023 PGK1P00558 417 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 HMGN5P82970 282 aaKnown RBP20.67■□□□□ 0.9
CLN3-239ENST00000628023 TRIM29Q14134 588 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 TTLL4Q14679 1199 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 MCTP2Q6DN12 878 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 IQSEC1Q6DN90 963 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 FAM177A1Q8N128 213 aaPredicted RBP20.67■□□□□ 0.9
CLN3-239ENST00000628023 FAM184AQ8NB25 1140 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 WDR11Q9BZH6 1224 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 SPC25Q9HBM1 224 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 PCDHA4Q9UN74 947 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 KCNJ14Q9UNX9 436 aa20.67■□□□□ 0.9
CLN3-239ENST00000628023 DUSP11O75319 330 aaKnown RBP20.66■□□□□ 0.9
CLN3-239ENST00000628023 FDPSP14324 419 aaKnown RBP20.66■□□□□ 0.9
CLN3-239ENST00000628023 GNPTABQ3T906 1256 aa20.66■□□□□ 0.9
CLN3-239ENST00000628023 PCNX4Q63HM2 1172 aa20.66■□□□□ 0.9
CLN3-239ENST00000628023 GALNT17Q6IS24 598 aa20.66■□□□□ 0.9
CLN3-239ENST00000628023 VSIG10LQ86VR7 867 aa20.66■□□□□ 0.9
CLN3-239ENST00000628023 RASGRP4Q8TDF6 673 aa20.66■□□□□ 0.9
CLN3-239ENST00000628023 ZFP91Q96JP5 570 aaPredicted RBP20.66■□□□□ 0.9
CLN3-239ENST00000628023 TSEN34Q9BSV6 310 aaKnown RBP20.66■□□□□ 0.9
CLN3-239ENST00000628023 MRVI1Q9Y6F6 885 aa20.66■□□□□ 0.9
CLN3-239ENST00000628023 ADCY6O43306 1168 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 STAM2O75886 525 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 SMPD1P17405 629 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 CLK2P49760 499 aaKnown RBP20.65■□□□□ 0.9
CLN3-239ENST00000628023 XRRA1Q6P2D8 792 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 Q7L0L9 218 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 TLK2Q86UE8 772 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 AP5M1Q9H0R1 490 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 BRMS1Q9HCU9 246 aa20.65■□□□□ 0.9
CLN3-239ENST00000628023 RTEL1Q9NZ71 1219 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms