RNA–Protein interactions for RNA: ENST00000618836.4

UBE2D3-233, Transcript of ubiquitin conjugating enzyme E2 D3, human

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-233	ENST00000618836	BCL2L12	Q9HB09	334 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	A1CF	Q9NQ94	594 aa	Known RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	FANCL	Q9NW38	375 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	UQCRHL	A0A096LP55	91 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TTI1	O43156	1089 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	HOXC11	O43248	304 aa	Predicted RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	UQCRH	P07919	91 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	MTHFD1	P11586	935 aa	Known RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CTNNA1	P35221	906 aa	Known RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	GNL1	P36915	607 aa	Predicted RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SCNN1D	P51172	638 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	NEK2	P51955	445 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	MRPS35	P82673	323 aa	Known RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PPID	Q08752	370 aa	Known RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SYCP1	Q15431	976 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	KRT71	Q3SY84	523 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	BTNL9	Q6UXG8	535 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	ARHGAP27	Q6ZUM4	889 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	DGLUCY	Q7Z3D6	616 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	MAATS1	Q7Z4T9	603 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SLC44A2	Q8IWA5	706 aa	Predicted RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	NKAP	Q8N5F7	415 aa	Known RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CLMN	Q96JQ2	1002 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	KATNAL1	Q9BW62	490 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CCDC113	Q9H0I3	377 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	ALG13	Q9NP73	1137 aa	Known RBP	4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	IL1RAPL1	Q9NZN1	696 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SPG7	Q9UQ90	795 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	DGKB	Q9Y6T7	804 aa		4.57	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SYNJ2BP-COX16	A0A087WUM0	186 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TMEM221	A6NGB7	291 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	B4GALT4	O60513	344 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	RASGRP1	O95267	797 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	XRCC6	P12956	609 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TRIM27	P14373	513 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PRKG2	Q13237	762 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	MTMR3	Q13615	1198 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	DPYS	Q14117	519 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	NEDD9	Q14511	834 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SEPT14	Q6ZU15	432 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TRIM58	Q8NG06	486 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CORO1B	Q9BR76	489 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SPATS2L	Q9NUQ6	558 aa	Known RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PFDN2	Q9UHV9	154 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CROT	Q9UKG9	612 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TOGARAM1	Q9Y4F4	1720 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	LRRC72	A6NJI9	287 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	KCNJ13	O60928	360 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	REC8	O95072	547 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	AGR2	O95994	175 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	ABL1	P00519	1130 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	HOXC12	P31275	282 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CA8	P35219	290 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PPM1F	P49593	454 aa	Predicted RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	RAB27A	P51159	221 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SMTN	P53814	917 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	WSCD2	Q2TBF2	565 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	KAZN	Q674X7	775 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SPOCD1	Q6ZMY3	1216 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SAMD7	Q7Z3H4	446 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TCEAL8	Q8IYN2	117 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TCP11	Q8WWU5	503 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SLC39A7	Q92504	469 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	EXOC4	Q96A65	974 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	MAML3	Q96JK9	1138 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	COG8	Q96MW5	612 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	C7orf25	Q9BPX7	421 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	SMARCAD1	Q9H4L7	1026 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PICK1	Q9NRD5	415 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	MRGBP	Q9NV56	204 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TUBA8	Q9NY65	449 aa	Predicted RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PDP2	Q9P2J9	529 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	ARHGAP28	Q9P2N2	729 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	ITGB1BP2	Q9UKP3	347 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	GRID1	Q9ULK0	1009 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TIMM22	Q9Y584	194 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	KDM3B	Q7LBC6	1761 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TAF1L	Q8IZX4	1826 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836		A0A1B0GUL7	405 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	C17orf113	A0A1B0GUU1	675 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836		A0A1B0GVC2	190 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CLRN2	A0PK11	232 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	ABLIM1	O14639	778 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PYGL	P06737	847 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	KRT10	P13645	584 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	PML	P29590	882 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	CSTF2	P33240	577 aa	Known RBP eCLIP	4.56	□□□□□ -1.68	8e-8	■■■■□ 20.3
UBE2D3-233	ENST00000618836	RDX	P35241	583 aa	Known RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	RENBP	P51606	427 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TUBA1B	P68363	451 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TBX2	Q13207	712 aa	Predicted RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TRIM71	Q2Q1W2	868 aa	Known RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	DALRD3	Q5D0E6	543 aa	Known RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	RRP12	Q5JTH9	1297 aa	Known RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	TUBA1A	Q71U36	451 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	OTOP3	Q7RTS5	596 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	AFAP1	Q8N556	730 aa		4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	4.56	□□□□□ -1.68
UBE2D3-233	ENST00000618836	DPF3	Q92784	378 aa		4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms