RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PITPNM1O00562 1244 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 CYTH3O43739 400 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 RGS20O76081 388 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 PFKMP08237 780 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 MMP3P08254 477 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 CASTP20810 708 aaKnown RBP8.85□□□□□ -0.99
CUX1-219ENST00000606749 HOXA13P31271 388 aaPredicted RBP8.85□□□□□ -0.99
CUX1-219ENST00000606749 RABGGTBP53611 331 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 CHMP4BP1P59074 171 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 TROAPQ12815 778 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 WTAPQ15007 396 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 DGKDQ16760 1214 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 DEFB128Q7Z7B8 93 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 RALYLQ86SE5 291 aaKnown RBP8.85□□□□□ -0.99
CUX1-219ENST00000606749 VSIG10LQ86VR7 867 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 SESTD1Q86VW0 696 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 RETREG2Q8NC44 543 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 KAT2BQ92831 832 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 EMID1Q96A84 441 aaPredicted RBP8.85□□□□□ -0.99
CUX1-219ENST00000606749 PIGSQ96S52 555 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 PDCD2LQ9BRP1 358 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 NKX2-4Q9H2Z4 354 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 PRDM12Q9H4Q4 367 aa8.85□□□□□ -0.99
CUX1-219ENST00000606749 YBX2Q9Y2T7 364 aaKnown RBP8.85□□□□□ -0.99
CUX1-219ENST00000606749 PNMA6FA0A0J9YX94 578 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 GCOM1H8Y6P7 765 aaPredicted RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 PPFIA4O75335 1185 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 POLR2MP0CAP2 368 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 MYCLP12524 364 aaPredicted RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 MYOGP15173 224 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 ATP2A2P16615 1042 aaKnown RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 RFC2P35250 354 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 ANTXR2P58335 489 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 TRAF1Q13077 416 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 BFSP2Q13515 415 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 LAMC2Q13753 1193 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 SART3Q15020 963 aaKnown RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 PGM5Q15124 567 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 PTGISQ16647 500 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 TMEM67Q5HYA8 995 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 GDF6Q6KF10 455 aaPredicted RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 CATIPQ7Z7H3 387 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 HOMER1Q86YM7 354 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 DHX37Q8IY37 1157 aaKnown RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 USP38Q8NB14 1042 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 PPTC7Q8NI37 304 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 CTAGE1Q96RT6 745 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 GAS2L1Q99501 681 aaPredicted RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 SLC28A3Q9HAS3 691 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 PCDHA11Q9Y5I1 949 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 RBM8AQ9Y5S9 174 aaKnown RBP8.84□□□□□ -0.99
CUX1-219ENST00000606749 MRVI1Q9Y6F6 885 aa8.84□□□□□ -0.99
CUX1-219ENST00000606749 ZBBXA8MT70 800 aa8.83□□□□□ -1
CUX1-219ENST00000606749 HAS3O00219 553 aa8.83□□□□□ -1
CUX1-219ENST00000606749 TGFB3P10600 412 aa8.83□□□□□ -1
CUX1-219ENST00000606749 SP2Q02086 613 aa8.83□□□□□ -1
CUX1-219ENST00000606749 ADGRE1Q14246 886 aa8.83□□□□□ -1
CUX1-219ENST00000606749 GPNMBQ14956 572 aa8.83□□□□□ -1
CUX1-219ENST00000606749 CELF3Q5SZQ8 465 aaKnown RBP8.83□□□□□ -1
CUX1-219ENST00000606749 MYSM1Q5VVJ2 828 aa8.83□□□□□ -1
CUX1-219ENST00000606749 KCNV1Q6PIU1 500 aa8.83□□□□□ -1
CUX1-219ENST00000606749 FCHSD1Q86WN1 690 aa8.83□□□□□ -1
CUX1-219ENST00000606749 MB21D2Q8IYB1 491 aaPredicted RBP8.83□□□□□ -1
CUX1-219ENST00000606749 IL31RAQ8NI17 732 aa8.83□□□□□ -1
CUX1-219ENST00000606749 ZFP91Q96JP5 570 aaPredicted RBP8.83□□□□□ -1
CUX1-219ENST00000606749 FTOQ9C0B1 505 aaKnown RBP eCLIP8.83□□□□□ -1
CUX1-219ENST00000606749 LY9Q9HBG7 655 aa8.83□□□□□ -1
CUX1-219ENST00000606749 HDAC6Q9UBN7 1215 aa8.83□□□□□ -1
CUX1-219ENST00000606749 GTF2IRD1Q9UHL9 959 aa8.83□□□□□ -1
CUX1-219ENST00000606749 NOD1Q9Y239 953 aa8.83□□□□□ -1
CUX1-219ENST00000606749 MYH6P13533 1939 aa8.83□□□□□ -1
CUX1-219ENST00000606749 CHD9Q3L8U1 2897 aa8.83□□□□□ -1
CUX1-219ENST00000606749 BAZ2BQ9UIF8 2168 aaKnown RBP8.82□□□□□ -1
CUX1-219ENST00000606749 KIAA1217Q5T5P2 1943 aa8.82□□□□□ -1
CUX1-219ENST00000606749 ACTN1P12814 892 aa8.82□□□□□ -1
CUX1-219ENST00000606749 HOXD8P13378 290 aaPredicted RBP8.82□□□□□ -1
CUX1-219ENST00000606749 KCNA4P22459 653 aa8.82□□□□□ -1
CUX1-219ENST00000606749 SMARCA1P28370 1054 aa8.82□□□□□ -1
CUX1-219ENST00000606749 CCND2P30279 289 aa8.82□□□□□ -1
CUX1-219ENST00000606749 PSEN2P49810 448 aa8.82□□□□□ -1
CUX1-219ENST00000606749 MFSD10Q14728 455 aa8.82□□□□□ -1
CUX1-219ENST00000606749 KIAA0753Q2KHM9 967 aa8.82□□□□□ -1
CUX1-219ENST00000606749 HSDL1Q3SXM5 330 aa8.82□□□□□ -1
CUX1-219ENST00000606749 ZNF654Q8IZM8 581 aa8.82□□□□□ -1
CUX1-219ENST00000606749 TMTC2Q8N394 836 aa8.82□□□□□ -1
CUX1-219ENST00000606749 C7orf31Q8N865 590 aa8.82□□□□□ -1
CUX1-219ENST00000606749 CAGE1Q8TC20 777 aa8.82□□□□□ -1
CUX1-219ENST00000606749 PHOSPHO2Q8TCD6 241 aa8.82□□□□□ -1
CUX1-219ENST00000606749 AFAP1L1Q8TED9 768 aa8.82□□□□□ -1
CUX1-219ENST00000606749 PIBF1Q8WXW3 757 aa8.82□□□□□ -1
CUX1-219ENST00000606749 PPM1EQ8WY54 764 aa8.82□□□□□ -1
CUX1-219ENST00000606749 DHX38Q92620 1227 aaKnown RBP8.82□□□□□ -1
CUX1-219ENST00000606749 GPKOWQ92917 476 aaPredicted RBP eCLIP8.82□□□□□ -1
CUX1-219ENST00000606749 SPATA33Q96N06 139 aa8.82□□□□□ -1
CUX1-219ENST00000606749 MAP3K14Q99558 947 aa8.82□□□□□ -1
CUX1-219ENST00000606749 ALG1Q9BT22 464 aa8.82□□□□□ -1
CUX1-219ENST00000606749 MTA3Q9BTC8 594 aa8.82□□□□□ -1
CUX1-219ENST00000606749 KATNAL1Q9BW62 490 aa8.82□□□□□ -1
CUX1-219ENST00000606749 LSG1Q9H089 658 aaKnown RBP8.82□□□□□ -1
CUX1-219ENST00000606749 BCAS3Q9H6U6 928 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms