RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 MTMR8Q96EF0 704 aa27.85■■■□□ 2.05
LSM4-202ENST00000593564 DDX41Q9UJV9 622 aaKnown RBP27.85■■■□□ 2.05
LSM4-202ENST00000593564 SCN5AQ14524 2016 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 KLRF2D3W0D1 207 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 CHMP4BP1P59074 171 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 CYB5R4Q7L1T6 521 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 CHST3Q7LGC8 479 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 CCDC155Q8N6L0 562 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 CAGE1Q8TC20 777 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 PHOSPHO2Q8TCD6 241 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 ATXN2LQ8WWM7 1075 aaKnown RBP27.84■■■□□ 2.05
LSM4-202ENST00000593564 CTAGE1Q96RT6 745 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 SLC9A7Q96T83 725 aa27.84■■■□□ 2.05
LSM4-202ENST00000593564 TANC1Q9C0D5 1861 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 MYH6P13533 1939 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 ZBTB5O15062 677 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 GSPT1P15170 499 aaKnown RBP27.83■■■□□ 2.05
LSM4-202ENST00000593564 PDE4AP27815 886 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 DGKDQ16760 1214 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 TMEM67Q5HYA8 995 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 TTC22Q5TAA0 569 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 FTOQ9C0B1 505 aaKnown RBP eCLIP27.83■■■□□ 2.05
LSM4-202ENST00000593564 MAP3K20Q9NYL2 800 aaKnown RBP27.83■■■□□ 2.05
LSM4-202ENST00000593564 THEGQ9P2T0 379 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 MAD2L2Q9UI95 211 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 MRVI1Q9Y6F6 885 aa27.83■■■□□ 2.05
LSM4-202ENST00000593564 PALM3A6NDB9 673 aaPredicted RBP27.82■■■□□ 2.04
LSM4-202ENST00000593564 PPP1R11O60927 126 aaPredicted RBP27.82■■■□□ 2.04
LSM4-202ENST00000593564 TRDNQ13061 729 aa27.82■■■□□ 2.04
LSM4-202ENST00000593564 GDF6Q6KF10 455 aaPredicted RBP27.82■■■□□ 2.04
LSM4-202ENST00000593564 SAMD3Q8N6K7 520 aa27.82■■■□□ 2.04
LSM4-202ENST00000593564 AFAP1L1Q8TED9 768 aa27.82■■■□□ 2.04
LSM4-202ENST00000593564 MUC3AQ02505 3323 aa27.82■■■□□ 2.04
LSM4-202ENST00000593564 KIAA1217Q5T5P2 1943 aa27.82■■■□□ 2.04
LSM4-202ENST00000593564 LAMC2Q13753 1193 aa27.81■■■□□ 2.04
LSM4-202ENST00000593564 CCDC85BQ15834 202 aaPredicted RBP27.81■■■□□ 2.04
LSM4-202ENST00000593564 PPTC7Q8NI37 304 aa27.81■■■□□ 2.04
LSM4-202ENST00000593564 PDCD2LQ9BRP1 358 aa27.81■■■□□ 2.04
LSM4-202ENST00000593564 PCDHA1Q9Y5I3 950 aa27.81■■■□□ 2.04
LSM4-202ENST00000593564 BAIAP3O94812 1187 aa27.8■■■□□ 2.04
LSM4-202ENST00000593564 CA3P07451 260 aa27.8■■■□□ 2.04
LSM4-202ENST00000593564 STOX1Q6ZVD7 989 aa27.8■■■□□ 2.04
LSM4-202ENST00000593564 KATNAL1Q9BW62 490 aa27.8■■■□□ 2.04
LSM4-202ENST00000593564 RBL2Q08999 1139 aa27.79■■■□□ 2.04
LSM4-202ENST00000593564 RUFY2Q8WXA3 655 aa27.79■■■□□ 2.04
LSM4-202ENST00000593564 DHX38Q92620 1227 aaKnown RBP27.79■■■□□ 2.04
LSM4-202ENST00000593564 ASB2Q96Q27 587 aa27.79■■■□□ 2.04
LSM4-202ENST00000593564 GTF2IRD1Q9UHL9 959 aa27.79■■■□□ 2.04
LSM4-202ENST00000593564 U3KPZ7 1027 aaPredicted RBP27.79■■■□□ 2.04
LSM4-202ENST00000593564 RGS20O76081 388 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 F2P00734 622 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 CYP21A2P08686 494 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 PSEN2P49810 448 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 TRAF1Q13077 416 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 GRM4Q14833 912 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 KCNV1Q6PIU1 500 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 HERC6Q8IVU3 1022 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 DHX37Q8IY37 1157 aaKnown RBP27.78■■■□□ 2.04
LSM4-202ENST00000593564 C7orf31Q8N865 590 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 RIOX1Q9H6W3 641 aa27.78■■■□□ 2.04
LSM4-202ENST00000593564 TET1Q8NFU7 2136 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 TRANK1O15050 2925 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 PARNO95453 639 aaKnown RBP27.77■■■□□ 2.04
LSM4-202ENST00000593564 HOXD8P13378 290 aaPredicted RBP27.77■■■□□ 2.04
LSM4-202ENST00000593564 SELPP16109 830 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 GPNMBQ14956 572 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 SLC35G1Q2M3R5 365 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 LRRC8DQ7L1W4 858 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 VSIG10LQ86VR7 867 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 HDAC6Q9UBN7 1215 aa27.77■■■□□ 2.04
LSM4-202ENST00000593564 HAS3O00219 553 aa27.76■■■□□ 2.03
LSM4-202ENST00000593564 MYCLP12524 364 aaPredicted RBP27.76■■■□□ 2.03
LSM4-202ENST00000593564 CHMLP26374 656 aa27.76■■■□□ 2.03
LSM4-202ENST00000593564 HOXA13P31271 388 aaPredicted RBP27.76■■■□□ 2.03
LSM4-202ENST00000593564 MRPS5P82675 430 aaKnown RBP27.76■■■□□ 2.03
LSM4-202ENST00000593564 PTH1RQ03431 593 aa27.76■■■□□ 2.03
LSM4-202ENST00000593564 MFSD10Q14728 455 aa27.76■■■□□ 2.03
LSM4-202ENST00000593564 HOMER1Q86YM7 354 aa27.76■■■□□ 2.03
LSM4-202ENST00000593564 ERICH2A1L162 156 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 KIF28PB7ZC32 967 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 IFIT3O14879 490 aaKnown RBP27.75■■■□□ 2.03
LSM4-202ENST00000593564 ZNF286BP0CG31 522 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 POU3F3P20264 500 aaPredicted RBP27.75■■■□□ 2.03
LSM4-202ENST00000593564 PGM5Q15124 567 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 KIAA0753Q2KHM9 967 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 CELF3Q5SZQ8 465 aaKnown RBP27.75■■■□□ 2.03
LSM4-202ENST00000593564 MYSM1Q5VVJ2 828 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 PIGSQ96S52 555 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 ALG1Q9BT22 464 aa27.75■■■□□ 2.03
LSM4-202ENST00000593564 TRIP12Q14669 1992 aaPredicted RBP27.74■■■□□ 2.03
LSM4-202ENST00000593564 GCOM1H8Y6P7 765 aaPredicted RBP27.74■■■□□ 2.03
LSM4-202ENST00000593564 TNFRSF10AO00220 468 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 CXCL10P02778 98 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 POLR2MP0CAP2 368 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 CKBP12277 381 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 TAP1Q03518 808 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 TROAPQ12815 778 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 PTK7Q13308 1070 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 RALYLQ86SE5 291 aaKnown RBP27.74■■■□□ 2.03
LSM4-202ENST00000593564 IL31RAQ8NI17 732 aa27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms