RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 EPOPA6NHQ4 379 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 HAS3O00219 553 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 HIP1O00291 1037 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 PPP1R11O60927 126 aaPredicted RBP13.71□□□□□ -0.21
CLIP3-204ENST00000590559 RGS20O76081 388 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 CA3P07451 260 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 PARP1P09874 1014 aaKnown RBP13.71□□□□□ -0.21
CLIP3-204ENST00000590559 HOXD8P13378 290 aaPredicted RBP13.71□□□□□ -0.21
CLIP3-204ENST00000590559 IGFBP4P22692 258 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 MRPS5P82675 430 aaKnown RBP13.71□□□□□ -0.21
CLIP3-204ENST00000590559 BFSP2Q13515 415 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 STXBP2Q15833 593 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 TMEM67Q5HYA8 995 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 SEPT14Q6ZU15 432 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 FBXO11Q86XK2 927 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 MCF2L2Q86YR7 1114 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 STAG2Q8N3U4 1231 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 CAGE1Q8TC20 777 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 AFAP1L1Q8TED9 768 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 PXMP2Q9NR77 195 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 MRPL11Q9Y3B7 192 aaKnown RBP13.71□□□□□ -0.21
CLIP3-204ENST00000590559 MTCH2Q9Y6C9 303 aa13.71□□□□□ -0.21
CLIP3-204ENST00000590559 BAZ2BQ9UIF8 2168 aaKnown RBP13.71□□□□□ -0.22
CLIP3-204ENST00000590559 SIP14410 1827 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 EIF3JO75822 258 aaKnown RBP13.7□□□□□ -0.22
CLIP3-204ENST00000590559 BAIAP3O94812 1187 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 CXCL10P02778 98 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 ACTN1P12814 892 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 TAP1Q03518 808 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 PTGISQ16647 500 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 IMMTQ16891 758 aaKnown RBP13.7□□□□□ -0.22
CLIP3-204ENST00000590559 SLC35G1Q2M3R5 365 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 STOX1Q6ZVD7 989 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 HERC6Q8IVU3 1022 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 KRT23Q9C075 422 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 CNNM2Q9H8M5 875 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 DIAPH3Q9NSV4 1193 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 MAP3K20Q9NYL2 800 aaKnown RBP13.7□□□□□ -0.22
CLIP3-204ENST00000590559 GTF2IRD1Q9UHL9 959 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 MAD2L2Q9UI95 211 aa13.7□□□□□ -0.22
CLIP3-204ENST00000590559 MICAL3Q7RTP6 2002 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 PALM3A6NDB9 673 aaPredicted RBP13.69□□□□□ -0.22
CLIP3-204ENST00000590559 RFXAPO00287 272 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 F2P00734 622 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 NR3C2P08235 984 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 BMP1P13497 986 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 CASTP20810 708 aaKnown RBP13.69□□□□□ -0.22
CLIP3-204ENST00000590559 TCTN1Q2MV58 587 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 TRIM71Q2Q1W2 868 aaKnown RBP13.69□□□□□ -0.22
CLIP3-204ENST00000590559 TRAF7Q6Q0C0 670 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 CYB5R4Q7L1T6 521 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 RETREG2Q8NC44 543 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 EXOC6Q8TAG9 804 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 ADAMTS19Q8TE59 1207 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 CTNNA3Q9UI47 895 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 DOCK5Q9H7D0 1870 aa13.69□□□□□ -0.22
CLIP3-204ENST00000590559 LPXNO60711 386 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 NBNO60934 754 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 SELPP16109 830 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 EIF2AK2P19525 551 aaKnown RBP13.68□□□□□ -0.22
CLIP3-204ENST00000590559 WDR5P61964 334 aaKnown RBP13.68□□□□□ -0.22
CLIP3-204ENST00000590559 DGKDQ16760 1214 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 ARHGEF16Q5VV41 709 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 MYSM1Q5VVJ2 828 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 SPRED2Q7Z698 418 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 SAMD3Q8N6K7 520 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 PPTC7Q8NI37 304 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 PDCD2LQ9BRP1 358 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 AMNQ9BXJ7 453 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 VAT1LQ9HCJ6 419 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 HDAC6Q9UBN7 1215 aa13.68□□□□□ -0.22
CLIP3-204ENST00000590559 KLRF2D3W0D1 207 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 ZBTB5O15062 677 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 PARNO95453 639 aaKnown RBP13.67□□□□□ -0.22
CLIP3-204ENST00000590559 CFBP00751 764 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 CKBP12277 381 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 GSPT1P15170 499 aaKnown RBP13.67□□□□□ -0.22
CLIP3-204ENST00000590559 PDE4AP27815 886 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 PSEN2P49810 448 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 MKRN4PQ13434 485 aaPredicted RBP13.67□□□□□ -0.22
CLIP3-204ENST00000590559 LAMC2Q13753 1193 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 HIC1Q14526 733 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 IFIT1BQ5T764 474 aaKnown RBP13.67□□□□□ -0.22
CLIP3-204ENST00000590559 LRRC8DQ7L1W4 858 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 CHST3Q7LGC8 479 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 VSIG10LQ86VR7 867 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 CCDC155Q8N6L0 562 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 WNT8BQ93098 351 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 FTOQ9C0B1 505 aaKnown RBP eCLIP13.67□□□□□ -0.22
CLIP3-204ENST00000590559 RIOX1Q9H6W3 641 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 NOD1Q9Y239 953 aa13.67□□□□□ -0.22
CLIP3-204ENST00000590559 LCHNA4D1U4 455 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 CYTH3O43739 400 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 PPFIA4O75335 1185 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 HOXC8P31273 242 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 SP2Q02086 613 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 TFF2Q03403 129 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 PTK7Q13308 1070 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 MBTPS1Q14703 1052 aa13.66□□□□□ -0.22
CLIP3-204ENST00000590559 MFSD10Q14728 455 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms