RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 FBXO11Q86XK2 927 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 KAT2BQ92831 832 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 KATNAL1Q9BW62 490 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 KRT23Q9C075 422 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 CPVLQ9H3G5 476 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 ZSWIM5Q9P217 1185 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 COL20A1Q9P218 1284 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 CTNNA3Q9UI47 895 aa16.33■□□□□ 0.2
VMP1-209ENST00000588915 TRANK1O15050 2925 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 COL9A1P20849 921 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 GHRHRQ02643 423 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 IMMTQ16891 758 aaKnown RBP16.32■□□□□ 0.2
VMP1-209ENST00000588915 QRICH1Q2TAL8 776 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 ARHGEF16Q5VV41 709 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 GDF6Q6KF10 455 aaPredicted RBP16.32■□□□□ 0.2
VMP1-209ENST00000588915 KCNV1Q6PIU1 500 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 CHD1LQ86WJ1 897 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 PLEKHM2Q8IWE5 1019 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 ENAHQ8N8S7 591 aaPredicted RBP16.32■□□□□ 0.2
VMP1-209ENST00000588915 CTAGE1Q96RT6 745 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 CNNM2Q9H8M5 875 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 JMJD4Q9H9V9 463 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 LMCD1Q9NZU5 365 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 GTF2IRD1Q9UHL9 959 aa16.32■□□□□ 0.2
VMP1-209ENST00000588915 PRRC2BQ5JSZ5 2229 aaKnown RBP16.31■□□□□ 0.2
VMP1-209ENST00000588915 TANC1Q9C0D5 1861 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 TLL1O43897 1013 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 EFCAB14O75071 495 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 CXCL10P02778 98 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 NR3C2P08235 984 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 TRAF1Q13077 416 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 CNKSR3Q6P9H4 555 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 CWC27Q6UX04 472 aaKnown RBP16.31■□□□□ 0.2
VMP1-209ENST00000588915 LRRC8DQ7L1W4 858 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 MICALL1Q8N3F8 863 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 AMNQ9BXJ7 453 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 DIAPH3Q9NSV4 1193 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 TET1Q8NFU7 2136 aa16.31■□□□□ 0.2
VMP1-209ENST00000588915 TRIP12Q14669 1992 aaPredicted RBP16.3■□□□□ 0.2
VMP1-209ENST00000588915 BDP1A6H8Y1 2624 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 ABHD14A-ACY1A0A1B0GW23 586 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 B4E1Z4 1266 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 HAS3O00219 553 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 RFXAPO00287 272 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 PPFIA4O75335 1185 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 HOXD8P13378 290 aaPredicted RBP16.3■□□□□ 0.2
VMP1-209ENST00000588915 HSD17B4P51659 736 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 NUCB1Q02818 461 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 PTK7Q13308 1070 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 GPNMBQ14956 572 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 SKIV2LQ15477 1246 aaKnown RBP16.3■□□□□ 0.2
VMP1-209ENST00000588915 C7orf31Q8N865 590 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 PPTC7Q8NI37 304 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 PPP1R13LQ8WUF5 828 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 PXMP2Q9NR77 195 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 MRVI1Q9Y6F6 885 aa16.3■□□□□ 0.2
VMP1-209ENST00000588915 KIAA1217Q5T5P2 1943 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 DHX16O60231 1041 aaKnown RBP16.29■□□□□ 0.2
VMP1-209ENST00000588915 F2P00734 622 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 CFBP00751 764 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 TGFB3P10600 412 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 CKBP12277 381 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 PSEN2P49810 448 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 CHMP4BP1P59074 171 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 WDR5P61964 334 aaKnown RBP16.29■□□□□ 0.2
VMP1-209ENST00000588915 STOX1Q6ZVD7 989 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 CHST3Q7LGC8 479 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 DHX37Q8IY37 1157 aaKnown RBP16.29■□□□□ 0.2
VMP1-209ENST00000588915 ARNTL2Q8WYA1 636 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 MTMR8Q96EF0 704 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 UBAC1Q9BSL1 405 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 C1QTNF1Q9BXJ1 281 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 CERS4Q9HA82 394 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 VAT1LQ9HCJ6 419 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 HDAC6Q9UBN7 1215 aa16.29■□□□□ 0.2
VMP1-209ENST00000588915 EPOPA6NHQ4 379 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 EIF2AK2P19525 551 aaKnown RBP16.28■□□□□ 0.2
VMP1-209ENST00000588915 TFF2Q03403 129 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 IKBKEQ14164 716 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 IFIT1BQ5T764 474 aaKnown RBP16.28■□□□□ 0.2
VMP1-209ENST00000588915 B4GALNT3Q6L9W6 998 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 VSIG10LQ86VR7 867 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 DHX38Q92620 1227 aaKnown RBP16.28■□□□□ 0.2
VMP1-209ENST00000588915 HLA-CQ95604 372 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 RAD9AQ99638 391 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 ZBED2Q9BTP6 218 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 LAMA4Q16363 1823 aa16.28■□□□□ 0.2
VMP1-209ENST00000588915 XIRP2A4UGR9 3374 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 ZBTB5O15062 677 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 LPXNO60711 386 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 NBNO60934 754 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 GJB5O95377 273 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 GRB10Q13322 594 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 MFSD10Q14728 455 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 KIAA0753Q2KHM9 967 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 MYSM1Q5VVJ2 828 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 PDCD2LQ9BRP1 358 aa16.27■□□□□ 0.2
VMP1-209ENST00000588915 EMSYQ7Z589 1322 aa16.26■□□□□ 0.19
VMP1-209ENST00000588915 KLRF2D3W0D1 207 aa16.26■□□□□ 0.19
VMP1-209ENST00000588915 OPLAHO14841 1288 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms