RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 PARNO95453 639 aaKnown RBP13.85□□□□□ -0.19
LIG3-209ENST00000586435 CA3P07451 260 aa13.85□□□□□ -0.19
LIG3-209ENST00000586435 CASTP20810 708 aaKnown RBP13.85□□□□□ -0.19
LIG3-209ENST00000586435 CCDC85BQ15834 202 aaPredicted RBP13.85□□□□□ -0.19
LIG3-209ENST00000586435 PTGISQ16647 500 aa13.85□□□□□ -0.19
LIG3-209ENST00000586435 B4GALNT3Q6L9W6 998 aa13.85□□□□□ -0.19
LIG3-209ENST00000586435 SEPT14Q6ZU15 432 aa13.85□□□□□ -0.19
LIG3-209ENST00000586435 ADAMTS19Q8TE59 1207 aa13.85□□□□□ -0.19
LIG3-209ENST00000586435 KAT2BQ92831 832 aa13.85□□□□□ -0.19
LIG3-209ENST00000586435 TSPYL2Q9H2G4 693 aaPredicted RBP13.85□□□□□ -0.19
LIG3-209ENST00000586435 JMJD4Q9H9V9 463 aa13.85□□□□□ -0.19
LIG3-209ENST00000586435 MAP3K20Q9NYL2 800 aaKnown RBP13.85□□□□□ -0.19
LIG3-209ENST00000586435 TCF20Q9UGU0 1960 aaKnown RBP13.85□□□□□ -0.19
LIG3-209ENST00000586435 TRANK1O15050 2925 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 EIF3JO75822 258 aaKnown RBP13.84□□□□□ -0.19
LIG3-209ENST00000586435 HSD17B4P51659 736 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 DGKDQ16760 1214 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 LY6KQ17RY6 165 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 HERC6Q8IVU3 1022 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 SAMD3Q8N6K7 520 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 PPP1R13LQ8WUF5 828 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 MTMR8Q96EF0 704 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 UBAC1Q9BSL1 405 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 KATNAL1Q9BW62 490 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 AMNQ9BXJ7 453 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 FTOQ9C0B1 505 aaKnown RBP eCLIP13.84□□□□□ -0.19
LIG3-209ENST00000586435 PXMP2Q9NR77 195 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 GTF2IRD1Q9UHL9 959 aa13.84□□□□□ -0.19
LIG3-209ENST00000586435 DDX41Q9UJV9 622 aaKnown RBP13.84□□□□□ -0.19
LIG3-209ENST00000586435 KIF28PB7ZC32 967 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 OPLAHO14841 1288 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 GTPBP6O43824 516 aaPredicted RBP13.83□□□□□ -0.2
LIG3-209ENST00000586435 DHX16O60231 1041 aaKnown RBP13.83□□□□□ -0.2
LIG3-209ENST00000586435 F2P00734 622 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 IGHDP01880 384 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 NR3C2P08235 984 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 HOXD8P13378 290 aaPredicted RBP13.83□□□□□ -0.2
LIG3-209ENST00000586435 SELPP16109 830 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 IFIT1BQ5T764 474 aaKnown RBP13.83□□□□□ -0.2
LIG3-209ENST00000586435 ARHGEF16Q5VV41 709 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 GDF6Q6KF10 455 aaPredicted RBP13.83□□□□□ -0.2
LIG3-209ENST00000586435 PPTC7Q8NI37 304 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 DHX38Q92620 1227 aaKnown RBP13.83□□□□□ -0.2
LIG3-209ENST00000586435 MTCH2Q9Y6C9 303 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 BAZ2BQ9UIF8 2168 aaKnown RBP13.83□□□□□ -0.2
LIG3-209ENST00000586435 MICAL3Q7RTP6 2002 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 SIP14410 1827 aa13.83□□□□□ -0.2
LIG3-209ENST00000586435 HAS3O00219 553 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 CXCL10P02778 98 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 EIF2AK2P19525 551 aaKnown RBP13.82□□□□□ -0.2
LIG3-209ENST00000586435 KCNJ6P48051 423 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 WDR5P61964 334 aaKnown RBP13.82□□□□□ -0.2
LIG3-209ENST00000586435 TAP1Q03518 808 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 LAMC2Q13753 1193 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 GPNMBQ14956 572 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 SEC23AQ15436 765 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 AAK1Q2M2I8 961 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 LRRC8DQ7L1W4 858 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 IL27Q8NEV9 243 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 UHRF1Q96T88 793 aaPredicted RBP13.82□□□□□ -0.2
LIG3-209ENST00000586435 MRVI1Q9Y6F6 885 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 BRWD1Q9NSI6 2320 aa13.82□□□□□ -0.2
LIG3-209ENST00000586435 EPOPA6NHQ4 379 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 KLRF2D3W0D1 207 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 ZBTB5O15062 677 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 ARHGEF15O94989 841 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 CFBP00751 764 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 PSEN2P49810 448 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 CHMP4BP1P59074 171 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 CNKSR3Q6P9H4 555 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 KCNV1Q6PIU1 500 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 STOX1Q6ZVD7 989 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 CHST3Q7LGC8 479 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 MICALL1Q8N3F8 863 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 STAG2Q8N3U4 1231 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 C7orf31Q8N865 590 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 PDCD2LQ9BRP1 358 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 VAT1LQ9HCJ6 419 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 HDAC6Q9UBN7 1215 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 MAD2L2Q9UI95 211 aa13.81□□□□□ -0.2
LIG3-209ENST00000586435 REV3LO60673 3130 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 PALM3A6NDB9 673 aaPredicted RBP13.8□□□□□ -0.2
LIG3-209ENST00000586435 TLL1O43897 1013 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 PPP1R11O60927 126 aaPredicted RBP13.8□□□□□ -0.2
LIG3-209ENST00000586435 EFCAB14O75071 495 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 RGS20O76081 388 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 CKBP12277 381 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 TRAF1Q13077 416 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 PTK7Q13308 1070 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 MFSD10Q14728 455 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 KIAA0753Q2KHM9 967 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 DHX37Q8IY37 1157 aaKnown RBP13.8□□□□□ -0.2
LIG3-209ENST00000586435 IL25Q9H293 177 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 COG5Q9UP83 839 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 BDP1A6H8Y1 2624 aa13.8□□□□□ -0.2
LIG3-209ENST00000586435 ABHD14A-ACY1A0A1B0GW23 586 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 RFXAPO00287 272 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 NBNO60934 754 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 PPFIA4O75335 1185 aa13.79□□□□□ -0.2
LIG3-209ENST00000586435 ZNF286BP0CG31 522 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms