RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 LSRQ86X29 649 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 NBPF5PQ86XG9 351 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 TREML1Q86YW5 311 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 GLIS3Q8NEA6 775 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 SSH3Q8TE77 659 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 UNC93B1Q9H1C4 597 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 TCF7L1Q9HCS4 588 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 SEPT9Q9UHD8 586 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 ACAD8Q9UKU7 415 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 PA2G4Q9UQ80 394 aaKnown RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 EXOC6BQ9Y2D4 811 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 LUC7L2Q9Y383 392 aaKnown RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 ZNF541Q9H0D2 1346 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 FOXN1O15353 648 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 MMP14P50281 582 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 C4orf48Q5BLP8 95 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 LMBR1LQ6UX01 489 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 SPATS2Q86XZ4 545 aaKnown RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 FAM178BQ8IXR5 827 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 ALDH16A1Q8IZ83 802 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 RTKN2Q8IZC4 609 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 MSL3Q8N5Y2 521 aaKnown RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 CNTD1Q8N815 330 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 RBBP8NLQ8NC74 664 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 LEO1Q8WVC0 666 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 KISS1RQ969F8 398 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 DCTPP1Q9H773 170 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 PPM1HQ9ULR3 514 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 ZNRF3Q9ULT6 936 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 DMTF1Q9Y222 760 aa8.01□□□□□ -1.13
VPS53-217ENST00000575100 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.01□□□□□ -1.13
VPS53-217ENST00000575100 COL4A1P02462 1669 aa8□□□□□ -1.13
VPS53-217ENST00000575100 FZD9O00144 591 aa8□□□□□ -1.13
VPS53-217ENST00000575100 EML1O00423 815 aa8□□□□□ -1.13
VPS53-217ENST00000575100 CCNFP41002 786 aa8□□□□□ -1.13
VPS53-217ENST00000575100 RFX5P48382 616 aaPredicted RBP8□□□□□ -1.13
VPS53-217ENST00000575100 LIG3P49916 1009 aa8□□□□□ -1.13
VPS53-217ENST00000575100 FBXW10Q5XX13 1052 aa8□□□□□ -1.13
VPS53-217ENST00000575100 MZT2BQ6NZ67 158 aa8□□□□□ -1.13
VPS53-217ENST00000575100 CNNM4Q6P4Q7 775 aa8□□□□□ -1.13
VPS53-217ENST00000575100 TPTE2Q6XPS3 522 aa8□□□□□ -1.13
VPS53-217ENST00000575100 HACL1Q9UJ83 578 aa8□□□□□ -1.13
VPS53-217ENST00000575100 LHX6Q9UPM6 363 aa8□□□□□ -1.13
VPS53-217ENST00000575100 FAM50BQ9Y247 325 aa8□□□□□ -1.13
VPS53-217ENST00000575100 PCDHGB3Q9Y5G1 929 aa8□□□□□ -1.13
VPS53-217ENST00000575100 ABCC12Q96J65 1359 aa8□□□□□ -1.13
VPS53-217ENST00000575100 COL4A5P29400 1685 aa8□□□□□ -1.13
VPS53-217ENST00000575100 CDHR2Q9BYE9 1310 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 DDX60Q8IY21 1712 aaKnown RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 PMM2O15305 246 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 BRINP1O60477 761 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 GADD45BO75293 160 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 MTA2O94776 668 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 FBXO21O94952 628 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 SDSP20132 328 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 ALDH1B1P30837 517 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 IARSP41252 1262 aaKnown RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 CCT5P48643 541 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 CTCFP49711 727 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 VEGFBP49765 207 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 PDE1CQ14123 709 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 DHCR24Q15392 516 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 CRY2Q49AN0 593 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 PARP10Q53GL7 1025 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 ARSIQ5FYB1 569 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 SPECC1Q5M775 1068 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 EPM2AIP1Q7L775 607 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 EEPD1Q7L9B9 569 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 PPM1KQ8N3J5 372 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 DDX1Q92499 740 aaKnown RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 NELL1Q92832 810 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 TTC17Q96AE7 1141 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 CDK5RAP3Q96JB5 506 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 TBATAQ96M53 351 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 NELL2Q99435 816 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 UTP14AQ9BVJ6 771 aaKnown RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 OSBPL5Q9H0X9 879 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 ZNF277Q9NRM2 450 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 SH3TC1Q8TE82 1336 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 SETSIPP0DME0 302 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 EPHX2P34913 555 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 CLK1P49759 484 aaKnown RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 SH3PXD2AQ5TCZ1 1133 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 C1orf122Q6ZSJ8 110 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 SV2BQ7L1I2 683 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 PNMA8AQ86V59 439 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 BPHLQ86WA6 291 aaPredicted RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 GPC2Q8N158 579 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 CHCHD4Q8N4Q1 142 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 TTLL11Q8NHH1 800 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 PARD3BQ8TEW8 1205 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 KIFC2Q96AC6 838 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 PAWRQ96IZ0 340 aaKnown RBP7.99□□□□□ -1.13
VPS53-217ENST00000575100 SEZ6LQ9BYH1 1024 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 ZSWIM6Q9HCJ5 1215 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 KMT5AQ9NQR1 393 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 WBP1LQ9NX94 342 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 FAM13BQ9NYF5 915 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 USP3Q9Y6I4 520 aa7.99□□□□□ -1.13
VPS53-217ENST00000575100 LAMB2P55268 1798 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms