RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 STAG2Q8N3U4 1231 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 USP38Q8NB14 1042 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 CAGE1Q8TC20 777 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 PHOSPHO2Q8TCD6 241 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 IL25Q9H293 177 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 DDX41Q9UJV9 622 aaKnown RBP19.6■□□□□ 0.73
CLN3-231ENST00000568422 CHD7Q9P2D1 2997 aa19.59■□□□□ 0.73
CLN3-231ENST00000568422 EIF2AK2P19525 551 aaKnown RBP19.59■□□□□ 0.73
CLN3-231ENST00000568422 LAMC2Q13753 1193 aa19.59■□□□□ 0.73
CLN3-231ENST00000568422 PTGISQ16647 500 aa19.59■□□□□ 0.73
CLN3-231ENST00000568422 KCNV1Q6PIU1 500 aa19.59■□□□□ 0.73
CLN3-231ENST00000568422 CYB5R4Q7L1T6 521 aa19.59■□□□□ 0.73
CLN3-231ENST00000568422 MAD2L2Q9UI95 211 aa19.59■□□□□ 0.73
CLN3-231ENST00000568422 PCDHA1Q9Y5I3 950 aa19.59■□□□□ 0.73
CLN3-231ENST00000568422 SPTBN5Q9NRC6 3674 aaKnown RBP19.59■□□□□ 0.73
CLN3-231ENST00000568422 ERICH2A1L162 156 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 OPLAHO14841 1288 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 PARNO95453 639 aaKnown RBP19.58■□□□□ 0.72
CLN3-231ENST00000568422 GSPT1P15170 499 aaKnown RBP19.58■□□□□ 0.72
CLN3-231ENST00000568422 PDE4AP27815 886 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 RABGGTBP53611 331 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 TJAP1Q5JTD0 557 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 PPP2R2DQ66LE6 453 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 STOX1Q6ZVD7 989 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 PPTC7Q8NI37 304 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 AFAP1L1Q8TED9 768 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 SLC9A7Q96T83 725 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 KATNAL1Q9BW62 490 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 MRVI1Q9Y6F6 885 aa19.58■□□□□ 0.72
CLN3-231ENST00000568422 BAIAP3O94812 1187 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 CYP21A2P08686 494 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 IGFBP4P22692 258 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 CHMP4BP1P59074 171 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 ADGRE1Q14246 886 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 SART3Q15020 963 aaKnown RBP19.57■□□□□ 0.72
CLN3-231ENST00000568422 TMEM67Q5HYA8 995 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 CHST3Q7LGC8 479 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 DHX37Q8IY37 1157 aaKnown RBP19.57■□□□□ 0.72
CLN3-231ENST00000568422 ATXN2LQ8WWM7 1075 aaKnown RBP19.57■□□□□ 0.72
CLN3-231ENST00000568422 KAT2BQ92831 832 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 PDCD2LQ9BRP1 358 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 FTOQ9C0B1 505 aaKnown RBP eCLIP19.57■□□□□ 0.72
CLN3-231ENST00000568422 TRANK1O15050 2925 aa19.57■□□□□ 0.72
CLN3-231ENST00000568422 PPP1R11O60927 126 aaPredicted RBP19.56■□□□□ 0.72
CLN3-231ENST00000568422 CHMLP26374 656 aa19.56■□□□□ 0.72
CLN3-231ENST00000568422 GRM4Q14833 912 aa19.56■□□□□ 0.72
CLN3-231ENST00000568422 GDF6Q6KF10 455 aaPredicted RBP19.56■□□□□ 0.72
CLN3-231ENST00000568422 C7orf31Q8N865 590 aa19.56■□□□□ 0.72
CLN3-231ENST00000568422 NCOA7Q8NI08 942 aa19.56■□□□□ 0.72
CLN3-231ENST00000568422 PPP1R13LQ8WUF5 828 aa19.56■□□□□ 0.72
CLN3-231ENST00000568422 RIOX1Q9H6W3 641 aa19.56■□□□□ 0.72
CLN3-231ENST00000568422 SUPT16HQ9Y5B9 1047 aaKnown RBP19.56■□□□□ 0.72
CLN3-231ENST00000568422 IFIT3O14879 490 aaKnown RBP19.55■□□□□ 0.72
CLN3-231ENST00000568422 PPFIA4O75335 1185 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 TGFB3P10600 412 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 MYOGP15173 224 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 RBL2Q08999 1139 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 RALYLQ86SE5 291 aaKnown RBP19.55■□□□□ 0.72
CLN3-231ENST00000568422 VSIG10LQ86VR7 867 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 PPM1EQ8WY54 764 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 CTAGE1Q96RT6 745 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 THEGQ9P2T0 379 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 GTF2IRD1Q9UHL9 959 aa19.55■□□□□ 0.72
CLN3-231ENST00000568422 TET1Q8NFU7 2136 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 KIF28PB7ZC32 967 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 GCOM1H8Y6P7 765 aaPredicted RBP19.54■□□□□ 0.72
CLN3-231ENST00000568422 F2P00734 622 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 POLR2MP0CAP2 368 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 HOXD8P13378 290 aaPredicted RBP19.54■□□□□ 0.72
CLN3-231ENST00000568422 SELPP16109 830 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 PTH1RQ03431 593 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 WTAPQ15007 396 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 PGM5Q15124 567 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 HOMER1Q86YM7 354 aa19.54■□□□□ 0.72
CLN3-231ENST00000568422 TSPYL2Q9H2G4 693 aaPredicted RBP19.54■□□□□ 0.72
CLN3-231ENST00000568422 BAZ2BQ9UIF8 2168 aaKnown RBP19.54■□□□□ 0.72
CLN3-231ENST00000568422 PNMA6FA0A0J9YX94 578 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 E7EWF7 191 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 RGS20O76081 388 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 MYCLP12524 364 aaPredicted RBP19.53■□□□□ 0.72
CLN3-231ENST00000568422 CCND2P30279 289 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 PSEN2P49810 448 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 TROAPQ12815 778 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 MFSD10Q14728 455 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 KIAA0753Q2KHM9 967 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 CELF3Q5SZQ8 465 aaKnown RBP19.53■□□□□ 0.72
CLN3-231ENST00000568422 MYSM1Q5VVJ2 828 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 LRRC8DQ7L1W4 858 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 PIGSQ96S52 555 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 HDAC6Q9UBN7 1215 aa19.53■□□□□ 0.72
CLN3-231ENST00000568422 HAS3O00219 553 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 SGSM2O43147 1006 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 CA3P07451 260 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 POU3F3P20264 500 aaPredicted RBP19.52■□□□□ 0.72
CLN3-231ENST00000568422 HOXA13P31271 388 aaPredicted RBP19.52■□□□□ 0.72
CLN3-231ENST00000568422 KCNJ6P48051 423 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 PTK7Q13308 1070 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 CATIPQ7Z7H3 387 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 HERC6Q8IVU3 1022 aa19.52■□□□□ 0.72
CLN3-231ENST00000568422 SPATA33Q96N06 139 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms