RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 PXMP2Q9NR77 195 aa11.52□□□□□ -0.57
SMG1-208ENST00000563448 EIF2AK2P19525 551 aaKnown RBP11.51□□□□□ -0.57
SMG1-208ENST00000563448 ZNF76P36508 570 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 PRR16Q569H4 304 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 ARHGEF16Q5VV41 709 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 PCNX4Q63HM2 1172 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 CCDC73Q6ZRK6 1079 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 FMR1NBQ8N0W7 255 aaPredicted RBP11.51□□□□□ -0.57
SMG1-208ENST00000563448 SHCBP1Q8NEM2 672 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 GJA10Q969M2 543 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 PDCD2LQ9BRP1 358 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 PORCNQ9H237 461 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 MROH8Q9H579 483 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 EFCC1Q9HA90 598 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 KCNMB3Q9NPA1 279 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 DACT1Q9NYF0 836 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 ZSWIM8A7E2V4 1837 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 ZNF236Q9UL36 1845 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 PFASO15067 1338 aa11.51□□□□□ -0.57
SMG1-208ENST00000563448 LONP1P36776 959 aaKnown RBP11.5□□□□□ -0.57
SMG1-208ENST00000563448 TXKP42681 527 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 TM4SF4P48230 202 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 APLP1P51693 650 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 MRPS9P82933 396 aaKnown RBP11.5□□□□□ -0.57
SMG1-208ENST00000563448 CNTN2Q02246 1040 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 FAM160A1Q05DH4 1040 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 PAXIP1Q6ZW49 1069 aaPredicted RBP11.5□□□□□ -0.57
SMG1-208ENST00000563448 SYMPKQ92797 1274 aaKnown RBP11.5□□□□□ -0.57
SMG1-208ENST00000563448 EPSTI1Q96J88 318 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 UIMC1Q96RL1 719 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 GZF1Q9H116 711 aaPredicted RBP11.5□□□□□ -0.57
SMG1-208ENST00000563448 CREBZFQ9NS37 354 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 ASTN1O14525 1302 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 RASSF10A6NK89 507 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 MSH4O15457 936 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 TECP42680 631 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 SREBF2Q12772 1141 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 GRM1Q13255 1194 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 TAF1CQ15572 869 aaPredicted RBP11.5□□□□□ -0.57
SMG1-208ENST00000563448 DEFB115Q30KQ5 88 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 CEP55Q53EZ4 464 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 PLA2G4DQ86XP0 818 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 ETNPPLQ8TBG4 499 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 MXRA8Q9BRK3 442 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 FAM13BQ9NYF5 915 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 UBIAD1Q9Y5Z9 338 aa11.5□□□□□ -0.57
SMG1-208ENST00000563448 SOWAHBA6NEL2 793 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 MEIS1O00470 390 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 TBX3O15119 743 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 ZNF202O95125 648 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 MYCLP12524 364 aaPredicted RBP11.49□□□□□ -0.57
SMG1-208ENST00000563448 ITGB5P18084 799 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 FXR2P51116 673 aaKnown RBP eCLIP11.49□□□□□ -0.575e-8■■□□□ 13
SMG1-208ENST00000563448 CCNA1P78396 465 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 FAM110CQ1W6H9 321 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 IGSF22Q8N9C0 903 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 NSUN6Q8TEA1 469 aaKnown RBP11.49□□□□□ -0.57
SMG1-208ENST00000563448 MMP19Q99542 508 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 TTC12Q9H892 705 aaPredicted RBP11.49□□□□□ -0.57
SMG1-208ENST00000563448 DDX19AQ9NUU7 478 aaKnown RBP11.49□□□□□ -0.57
SMG1-208ENST00000563448 CPA4Q9UI42 421 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 KCNH3Q9ULD8 1083 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 LOXHD1Q8IVV2 1947 aa11.49□□□□□ -0.57
SMG1-208ENST00000563448 A0A087X0B3 334 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 PP2D1A8MPX8 630 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 AOC2O75106 756 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 NR3C2P08235 984 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 ARP10275 920 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 BCRP11274 1271 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 CDC25AP30304 524 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 SYKP43405 635 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 CCDC183Q5T5S1 534 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 WDR78Q5VTH9 848 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 VSIG10LQ86VR7 867 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 FAM133AQ8N9E0 248 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 DNERQ8NFT8 737 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 SYAP1Q96A49 352 aaPredicted RBP11.48□□□□□ -0.57
SMG1-208ENST00000563448 MYH9P35579 1960 aaKnown RBP11.48□□□□□ -0.57
SMG1-208ENST00000563448 DNAJC25-GNG10A0A024R161 153 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 POTEB2H3BUK9 544 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 MARCH6O60337 910 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 PGK2P07205 417 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 CCND2P30279 289 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 ALDH5A1P51649 535 aaPredicted RBP11.48□□□□□ -0.57
SMG1-208ENST00000563448 PDIA5Q14554 519 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 KCTD2Q14681 263 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 TMEM266Q2M3C6 531 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 ZSCAN23Q3MJ62 389 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 NIPA1Q7RTP0 329 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 SLFN12Q8IYM2 578 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 FGD4Q96M96 766 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 AK8Q96MA6 479 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 FAM20AQ96MK3 541 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 PANK2Q9BZ23 570 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 WDR11Q9BZH6 1224 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 CLSTN2Q9H4D0 955 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 JADE2Q9NQC1 790 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 PCDHA12Q9UN75 941 aa11.48□□□□□ -0.57
SMG1-208ENST00000563448 POTEMA6NI47 508 aa11.47□□□□□ -0.57
SMG1-208ENST00000563448 KINO60870 393 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms