RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PBX1P40424 430 aa14.72□□□□□ -0.05
CLK3-206ENST00000562078 RCAN1P53805 252 aa14.72□□□□□ -0.05
CLK3-206ENST00000562078 KIAA1328Q86T90 577 aa14.72□□□□□ -0.05
CLK3-206ENST00000562078 CRACR2BQ8N4Y2 399 aaPredicted RBP14.72□□□□□ -0.05
CLK3-206ENST00000562078 JAKMIP2Q96AA8 810 aa14.72□□□□□ -0.05
CLK3-206ENST00000562078 ZIM3Q96PE6 472 aa14.72□□□□□ -0.05
CLK3-206ENST00000562078 ACTR5Q9H9F9 607 aaPredicted RBP14.72□□□□□ -0.05
CLK3-206ENST00000562078 DMGDHQ9UI17 866 aaKnown RBP14.72□□□□□ -0.05
CLK3-206ENST00000562078 REXO2Q9Y3B8 237 aaKnown RBP14.72□□□□□ -0.05
CLK3-206ENST00000562078 BUB1BO60566 1050 aaPredicted RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 FAM107AO95990 144 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 TBC1D25Q3MII6 688 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 ANKRD20A8PQ5CZ79 823 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 IFIT1BQ5T764 474 aaKnown RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 SPTY2D1Q68D10 685 aaPredicted RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 DPP8Q6V1X1 898 aaPredicted RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 KDM7AQ6ZMT4 941 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 TMTC1Q8IUR5 882 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 CNGA4Q8IV77 575 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 HOOK2Q96ED9 719 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 ZNF219Q9P2Y4 722 aaPredicted RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 KCNH3Q9ULD8 1083 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 MYH1P12882 1939 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 HSF2BPO75031 334 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 DEXIO95424 95 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 MMP1P03956 469 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 LDHBP07195 334 aaKnown RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 MDM2Q00987 491 aaPredicted RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 SLC7A5Q01650 507 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 CCDC181Q5TID7 509 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 RESP18Q5W5W9 173 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 C15orf52Q6ZUT6 534 aaKnown RBP14.71□□□□□ -0.05
CLK3-206ENST00000562078 GRAMD1CQ8IYS0 662 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 CYFIP2Q96F07 1278 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 NUP58Q9BVL2 599 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 YIPF3Q9GZM5 350 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 BATF3Q9NR55 127 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 ATP8A2Q9NTI2 1148 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 TRPC6Q9Y210 931 aa14.71□□□□□ -0.05
CLK3-206ENST00000562078 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.71□□□□□ -0.05
CLK3-206ENST00000562078 C10orf71Q711Q0 1435 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 MYH8P13535 1937 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 BTBD18B2RXH4 712 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 RIMBP2O15034 1052 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 FGRP09769 529 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 PCP11498 1178 aaKnown RBP14.7□□□□□ -0.06
CLK3-206ENST00000562078 CKAP4Q07065 602 aaKnown RBP14.7□□□□□ -0.06
CLK3-206ENST00000562078 GRIK5Q16478 980 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 PAPD7Q5XG87 772 aaKnown RBP14.7□□□□□ -0.06
CLK3-206ENST00000562078 MIS18BP1Q6P0N0 1132 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 DIS3L2Q8IYB7 885 aaKnown RBP14.7□□□□□ -0.06
CLK3-206ENST00000562078 WDR66Q8TBY9 1149 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 CNKSR1Q969H4 720 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 LRRC1Q9BTT6 524 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 NOD2Q9HC29 1040 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 PPANQ9NQ55 473 aaKnown RBP14.7□□□□□ -0.06
CLK3-206ENST00000562078 ABHD10Q9NUJ1 306 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 ARPP21Q9UBL0 812 aaPredicted RBP14.7□□□□□ -0.06
CLK3-206ENST00000562078 MGRN1O60291 552 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 NMT2O60551 498 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 ATP6V1G2O95670 118 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 FECHP22830 423 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 SCTRP47872 440 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 STX17P56962 302 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 SAFBQ15424 915 aaKnown RBP eCLIP14.7□□□□□ -0.06
CLK3-206ENST00000562078 DIXDC1Q155Q3 683 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 SLC5A9Q2M3M2 681 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 FAM47AQ5JRC9 791 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 CATIPQ7Z7H3 387 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 NOSTRINQ8IVI9 506 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 RPGRIP1Q96KN7 1286 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 MAP3K14Q99558 947 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 CHP1Q99653 195 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 ADD3Q9UEY8 706 aaKnown RBP14.7□□□□□ -0.06
CLK3-206ENST00000562078 BAIAP2L1Q9UHR4 511 aa14.7□□□□□ -0.06
CLK3-206ENST00000562078 USP17L8P0C7I0 530 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 R3HDM1Q15032 1099 aaKnown RBP14.69□□□□□ -0.06
CLK3-206ENST00000562078 PTPAQ15257 358 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 MLKLQ8NB16 471 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 UPF1Q92900 1129 aaKnown RBP eCLIP14.69□□□□□ -0.06
CLK3-206ENST00000562078 CD209Q9NNX6 404 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 MCM9Q9NXL9 1143 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 GGA2Q9UJY4 613 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 ATF5Q9Y2D1 282 aaPredicted RBP14.69□□□□□ -0.06
CLK3-206ENST00000562078 ORC4O43929 436 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 SMNDC1O75940 238 aaKnown RBP eCLIP14.69□□□□□ -0.066e-7■■□□□ 13.7
CLK3-206ENST00000562078 NR1D1P20393 614 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 ALS2CLQ60I27 953 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 KLHL10Q6JEL2 608 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 CYP26C1Q6V0L0 522 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 ZNF513Q8N8E2 541 aaPredicted RBP14.69□□□□□ -0.06
CLK3-206ENST00000562078 SPAG5Q96R06 1193 aa14.69□□□□□ -0.06
CLK3-206ENST00000562078 ZC3H12CQ9C0D7 883 aaKnown RBP14.69□□□□□ -0.06
CLK3-206ENST00000562078 FOCADQ5VW36 1801 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 DDX60LQ5H9U9 1706 aaKnown RBP14.68□□□□□ -0.06
CLK3-206ENST00000562078 hCG_1642624A0A1W2PR95 340 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 ZNF233A6NK53 670 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 PLEKHA8P1O95397 391 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 PYGLP06737 847 aa14.68□□□□□ -0.06
CLK3-206ENST00000562078 MDH1P40925 334 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms