RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PRC1O43663 620 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 POLR2MP0CAP2 368 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 CASTP20810 708 aaKnown RBP11.85□□□□□ -0.51
LDLR-214ENST00000560628 NFRKBQ6P4R8 1299 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 CASC1Q6TDU7 716 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 DHX37Q8IY37 1157 aaKnown RBP11.85□□□□□ -0.51
LDLR-214ENST00000560628 MAFAQ8NHW3 353 aaPredicted RBP11.85□□□□□ -0.51
LDLR-214ENST00000560628 IL31RAQ8NI17 732 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 VWCEQ96DN2 955 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 ESYT1Q9BSJ8 1104 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 PBX4Q9BYU1 374 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 LY9Q9HBG7 655 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 BAZ2BQ9UIF8 2168 aaKnown RBP11.85□□□□□ -0.51
LDLR-214ENST00000560628 COL6A3P12111 3177 aa11.85□□□□□ -0.51
LDLR-214ENST00000560628 ZBBXA8MT70 800 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 SLC27A2O14975 620 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 RGS20O76081 388 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 FOSL2P15408 326 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 GHRHRQ02643 423 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 TRAF1Q13077 416 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 PGM5Q15124 567 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 PTGISQ16647 500 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 NFXL1Q6ZNB6 911 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 VSIG10LQ86VR7 867 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 RAB11FIP4Q86YS3 637 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 ZNF654Q8IZM8 581 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 RETREG2Q8NC44 543 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 KAT2BQ92831 832 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 ALG1Q9BT22 464 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 MTIF3Q9H2K0 278 aaKnown RBP11.84□□□□□ -0.51
LDLR-214ENST00000560628 ANO2Q9NQ90 1003 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 MAP3K20Q9NYL2 800 aaKnown RBP11.84□□□□□ -0.51
LDLR-214ENST00000560628 NOD1Q9Y239 953 aa11.84□□□□□ -0.51
LDLR-214ENST00000560628 LAMA2P24043 3122 aaKnown RBP11.83□□□□□ -0.52
LDLR-214ENST00000560628 TMEM265A0A087WTH1 108 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 RBAK-RBAKDNI3L0D1 243 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 RXRAP19793 462 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 CCND2P30279 289 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 MCM5P33992 734 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 RABGGTBP53611 331 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 SP2Q02086 613 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 PTPN11Q06124 597 aaPredicted RBP11.83□□□□□ -0.52
LDLR-214ENST00000560628 LAMC2Q13753 1193 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 DGKDQ16760 1214 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 CREB3L3Q68CJ9 461 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 GDF6Q6KF10 455 aaPredicted RBP11.83□□□□□ -0.52
LDLR-214ENST00000560628 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.83□□□□□ -0.52
LDLR-214ENST00000560628 CMTR1Q8N1G2 835 aaKnown RBP11.83□□□□□ -0.52
LDLR-214ENST00000560628 SAMD3Q8N6K7 520 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 CTCFLQ8NI51 663 aaPredicted RBP11.83□□□□□ -0.52
LDLR-214ENST00000560628 GPKOWQ92917 476 aaPredicted RBP eCLIP11.83□□□□□ -0.52
LDLR-214ENST00000560628 LRRC2Q9BYS8 371 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 NKX2-4Q9H2Z4 354 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 MSRAQ9UJ68 235 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 SLC4A7Q9Y6M7 1214 aa11.83□□□□□ -0.52
LDLR-214ENST00000560628 CCDC69A6NI79 296 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 SH2B2O14492 632 aaPredicted RBP11.82□□□□□ -0.52
LDLR-214ENST00000560628 DDAH1O94760 285 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 PLEKHA8P1O95397 391 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 GGPS1O95749 300 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 IQCF3P0C7M6 154 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 ZNF286BP0CG31 522 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 MYOGP15173 224 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 KIF5BP33176 963 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 PSEN2P49810 448 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 NECTIN1Q15223 517 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 RAB30Q15771 203 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 CELF3Q5SZQ8 465 aaKnown RBP11.82□□□□□ -0.52
LDLR-214ENST00000560628 MYSM1Q5VVJ2 828 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 TMTC2Q8N394 836 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 SRBD1Q8N5C6 995 aaKnown RBP11.82□□□□□ -0.52
LDLR-214ENST00000560628 C7orf31Q8N865 590 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 PPTC7Q8NI37 304 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 RRP36Q96EU6 259 aaKnown RBP11.82□□□□□ -0.52
LDLR-214ENST00000560628 SPATA33Q96N06 139 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 CTAGE1Q96RT6 745 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 FTOQ9C0B1 505 aaKnown RBP eCLIP11.82□□□□□ -0.52
LDLR-214ENST00000560628 PRDM12Q9H4Q4 367 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 BCAS3Q9H6U6 928 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 RTEL1Q9NZ71 1219 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 HDAC6Q9UBN7 1215 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 YBX2Q9Y2T7 364 aaKnown RBP11.82□□□□□ -0.52
LDLR-214ENST00000560628 MYH6P13533 1939 aa11.82□□□□□ -0.52
LDLR-214ENST00000560628 hCG_1642624A0A1W2PR95 340 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 ZNF200P98182 395 aaPredicted RBP11.81□□□□□ -0.52
LDLR-214ENST00000560628 BFSP2Q13515 415 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 MFSD10Q14728 455 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 KIAA0753Q2KHM9 967 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 HSDL1Q3SXM5 330 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 KCNV1Q6PIU1 500 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 USP17L6PQ6QN14 398 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 CENPQQ7L2Z9 268 aaPredicted RBP11.81□□□□□ -0.52
LDLR-214ENST00000560628 CCDC82Q8N4S0 544 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 PPM1EQ8WY54 764 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 EMID1Q96A84 441 aaPredicted RBP11.81□□□□□ -0.52
LDLR-214ENST00000560628 TMEM87BQ96K49 555 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 MAP3K14Q99558 947 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 SPZ1Q9BXG8 430 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 MLXIPQ9HAP2 919 aa11.81□□□□□ -0.52
LDLR-214ENST00000560628 SCN10AQ9Y5Y9 1956 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms