RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 MSL3Q8N5Y2 521 aaKnown RBP12.55□□□□□ -0.4
CUX1-218ENST00000560541 RRP36Q96EU6 259 aaKnown RBP12.55□□□□□ -0.4
CUX1-218ENST00000560541 VEZTQ9HBM0 779 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 MKRN1Q9UHC7 482 aaKnown RBP12.55□□□□□ -0.4
CUX1-218ENST00000560541 RPS6KL1Q9Y6S9 549 aa12.55□□□□□ -0.4
CUX1-218ENST00000560541 MYH10P35580 1976 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 ZC3H4Q9UPT8 1303 aaKnown RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 PRPF6O94906 941 aaKnown RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 SNX1Q13596 522 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 LRRC41Q15345 812 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 CCDC170Q8IYT3 715 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 GLIS3Q8NEA6 775 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 NOC3LQ8WTT2 800 aaKnown RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 SMARCC1Q92922 1105 aaPredicted RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 LRRC1Q9BTT6 524 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 MMTAG2Q9BU76 263 aaKnown RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 CD248Q9HCU0 757 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 DMGDHQ9UI17 866 aaKnown RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 PALM3A6NDB9 673 aaPredicted RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 AKR1B10O60218 316 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 MYL1P05976 194 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 EIF4A3P38919 411 aaKnown RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 CCNI2Q6ZMN8 369 aaPredicted RBP12.54□□□□□ -0.4
CUX1-218ENST00000560541 RRAGAQ7L523 313 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 PTF1AQ7RTS3 328 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 FAM114A1Q8IWE2 563 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 PIGSQ96S52 555 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 PRDM16Q9HAZ2 1276 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 PCDHA13Q9Y5I0 950 aa12.54□□□□□ -0.4
CUX1-218ENST00000560541 KIAA1551Q9HCM1 1747 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 RASA1P20936 1047 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 KIF11P52732 1056 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 SND1Q7KZF4 910 aaKnown RBP eCLIP12.53□□□□□ -0.4
CUX1-218ENST00000560541 NEK8Q86SG6 692 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 CREG2Q8IUH2 290 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 AMOTL1Q8IY63 956 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 RETREG2Q8NC44 543 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 DAGLBQ8NCG7 672 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 GJA10Q969M2 543 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 SETDB2Q96T68 719 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 POTEMA6NI47 508 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 MYMKA6NI61 221 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 AGPSO00116 658 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 LAD1O00515 517 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 ZPR1O75312 459 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 CPP00450 1065 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 NF2P35240 595 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 PEX19P40855 299 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 AARSP49588 968 aaKnown RBP eCLIP12.53□□□□□ -0.42e-6■■■■■ 61.3
CUX1-218ENST00000560541 SETQ01105 290 aaPredicted RBP12.53□□□□□ -0.4
CUX1-218ENST00000560541 TMC4Q7Z404 712 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 C7orf25Q9BPX7 421 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 ZMYND12Q9H0C1 365 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 NDST4Q9H3R1 872 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 VIPAS39Q9H9C1 493 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 SNX12Q9UMY4 172 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 SPATA31A1Q5TZJ5 1347 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 LAMB1P07942 1786 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 TARSL2A2RTX5 802 aaKnown RBP12.53□□□□□ -0.4
CUX1-218ENST00000560541 LRRC53A6NM62 1247 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 BUB1O43683 1085 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 MCM3P25205 808 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 PRPHP41219 470 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 SOGA3Q5TF21 947 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 CNNM4Q6P4Q7 775 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 CALML4Q96GE6 196 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 ERGIC2Q96RQ1 377 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 TANGO6Q9C0B7 1094 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 ANKRD2Q9GZV1 360 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 NUCKS1Q9H1E3 243 aaKnown RBP12.53□□□□□ -0.4
CUX1-218ENST00000560541 SALL4Q9UJQ4 1053 aa12.53□□□□□ -0.4
CUX1-218ENST00000560541 LAMB2P55268 1798 aa12.52□□□□□ -0.4
CUX1-218ENST00000560541 FRMPD2Q68DX3 1309 aaPredicted RBP12.52□□□□□ -0.4
CUX1-218ENST00000560541 ANO9A1A5B4 782 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 GOLGA6BA6NDN3 693 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 NAP1L1P55209 391 aaKnown RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 GFPT1Q06210 699 aaPredicted RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 VWA3BQ502W6 1294 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 ZSCAN29Q8IWY8 852 aaPredicted RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 RPGRIP1Q96KN7 1286 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 AK8Q96MA6 479 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 PURBQ96QR8 312 aaKnown RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 EYA3Q99504 573 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 EHD4Q9H223 541 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 SH2D4AQ9H788 454 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 KANSL2Q9H9L4 492 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 C6orf50Q9HD87 102 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 USO1O60763 962 aaKnown RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 TACC1O75410 805 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 TDP2O95551 362 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 RDXP35241 583 aaKnown RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 USP8P40818 1118 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 EIF6P56537 245 aaKnown RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 NFIXQ14938 502 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 ENOX2Q16206 610 aaKnown RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 SPTY2D1Q68D10 685 aaPredicted RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 GALNT17Q6IS24 598 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 SV2BQ7L1I2 683 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 KRT25Q7Z3Z0 450 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 TRIM58Q8NG06 486 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms