RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 ZIC5Q96T25 663 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 PDCD2LQ9BRP1 358 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 NR1I2O75469 434 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 EIF2AK2P19525 551 aaKnown RBP13.8□□□□□ -0.2
HERC1-205ENST00000559886 FAM160A1Q05DH4 1040 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 NOGQ13253 232 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 SNW1Q13573 536 aaKnown RBP13.8□□□□□ -0.2
HERC1-205ENST00000559886 TAF1CQ15572 869 aaPredicted RBP13.8□□□□□ -0.2
HERC1-205ENST00000559886 CEP55Q53EZ4 464 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 ARHGEF16Q5VV41 709 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 DNERQ8NFT8 737 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 CYP2W1Q8TAV3 490 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 HPSEQ9Y251 543 aa13.8□□□□□ -0.2
HERC1-205ENST00000559886 KIAA1217Q5T5P2 1943 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 MEIS1O00470 390 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 TBX3O15119 743 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 PFKFB1P16118 471 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 NDUFA8P51970 172 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 SPECC1Q5M775 1068 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 CAVIN1Q6NZI2 390 aaKnown RBP13.79□□□□□ -0.2
HERC1-205ENST00000559886 XRRA1Q6P2D8 792 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 ETNPPLQ8TBG4 499 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 EFCC1Q9HA90 598 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 DACT1Q9NYF0 836 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 TXKP42681 527 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 FXR2P51116 673 aaKnown RBP eCLIP13.79□□□□□ -0.22e-6■■□□□ 14
HERC1-205ENST00000559886 MRPS9P82933 396 aaKnown RBP13.79□□□□□ -0.2
HERC1-205ENST00000559886 CNTN2Q02246 1040 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 GRM1Q13255 1194 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 USP49Q70CQ1 688 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 NIPA1Q7RTP0 329 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 FMR1NBQ8N0W7 255 aaPredicted RBP13.79□□□□□ -0.2
HERC1-205ENST00000559886 FAM133AQ8N9E0 248 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 CAPNS2Q96L46 248 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 MXRA8Q9BRK3 442 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 TMEM63CQ9P1W3 806 aa13.79□□□□□ -0.2
HERC1-205ENST00000559886 PLXNA1Q9UIW2 1896 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 DNAJC25-GNG10A0A024R161 153 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 POTEB2H3BUK9 544 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 BCRP11274 1271 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 FCER1AP12319 257 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 KCTD2Q14681 263 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 VSIG10LQ86VR7 867 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 SLFN12Q8IYM2 578 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 IGSF22Q8N9C0 903 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 AK8Q96MA6 479 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 FAM20AQ96MK3 541 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 MMP19Q99542 508 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 FAM13BQ9NYF5 915 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 UBIAD1Q9Y5Z9 338 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 ASTN1O14525 1302 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 MSH4O15457 936 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 TLR2O60603 784 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 NR3C2P08235 984 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 ITGB5P18084 799 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 TECP42680 631 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 SETQ01105 290 aaPredicted RBP13.78□□□□□ -0.2
HERC1-205ENST00000559886 WDR78Q5VTH9 848 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 PLA2G4DQ86XP0 818 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 SYMPKQ92797 1274 aaKnown RBP13.78□□□□□ -0.2
HERC1-205ENST00000559886 SYAP1Q96A49 352 aaPredicted RBP13.78□□□□□ -0.2
HERC1-205ENST00000559886 EPSTI1Q96J88 318 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 IWS1Q96ST2 819 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 TTC12Q9H892 705 aaPredicted RBP13.78□□□□□ -0.2
HERC1-205ENST00000559886 DDX19AQ9NUU7 478 aaKnown RBP13.78□□□□□ -0.2
HERC1-205ENST00000559886 CPA4Q9UI42 421 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 KCNH3Q9ULD8 1083 aa13.78□□□□□ -0.2
HERC1-205ENST00000559886 MARCH6O60337 910 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 MYCLP12524 364 aaPredicted RBP13.77□□□□□ -0.21
HERC1-205ENST00000559886 CCND2P30279 289 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 PDIA5Q14554 519 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 TMEM266Q2M3C6 531 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 C17orf99Q6UX52 265 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 ZFP91Q96JP5 570 aaPredicted RBP13.77□□□□□ -0.21
HERC1-205ENST00000559886 ZFYVE28Q9HCC9 887 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 ADD3Q9UEY8 706 aaKnown RBP13.77□□□□□ -0.21
HERC1-205ENST00000559886 PCDHA12Q9UN75 941 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 DOCK3Q8IZD9 2030 aa13.77□□□□□ -0.21
HERC1-205ENST00000559886 SOWAHBA6NEL2 793 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 STRNO43815 780 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 SYKP43405 635 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 REM2Q8IYK8 340 aaPredicted RBP13.76□□□□□ -0.21
HERC1-205ENST00000559886 ABRAQ8N0Z2 381 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 GJA10Q969M2 543 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 JADE2Q9NQC1 790 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 LRRC37A2A6NM11 1700 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 AOC2O75106 756 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 ZNF202O95125 648 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 MAPK4P31152 587 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 ALDH5A1P51649 535 aaPredicted RBP13.76□□□□□ -0.21
HERC1-205ENST00000559886 CCDC183Q5T5S1 534 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 RAB34Q9BZG1 259 aa13.76□□□□□ -0.21
HERC1-205ENST00000559886 MCM3APO60318 1980 aa13.75□□□□□ -0.21
HERC1-205ENST00000559886 CA12O43570 354 aa13.75□□□□□ -0.21
HERC1-205ENST00000559886 KINO60870 393 aaKnown RBP13.75□□□□□ -0.21
HERC1-205ENST00000559886 STAM2O75886 525 aa13.75□□□□□ -0.21
HERC1-205ENST00000559886 ALDH1A1P00352 501 aa13.75□□□□□ -0.21
HERC1-205ENST00000559886 PGK2P07205 417 aa13.75□□□□□ -0.21
HERC1-205ENST00000559886 ARP10275 920 aa13.75□□□□□ -0.21
HERC1-205ENST00000559886 CRHR2Q13324 411 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms