RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 CHD4Q14839 1912 aa5.48□□□□□ -1.53
SPG11-211ENST00000558561 MAP3K15Q6ZN16 1313 aa5.48□□□□□ -1.53
SPG11-211ENST00000558561 SBF1O95248 1867 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 BRCA1P38398 1863 aaKnown RBP5.47□□□□□ -1.53
SPG11-211ENST00000558561 WTIPA6NIX2 430 aaPredicted RBP5.47□□□□□ -1.53
SPG11-211ENST00000558561 SLC22A31A6NKX4 558 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 GSC2O15499 205 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 ADAM23O75077 832 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 SLITRK5O94991 958 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 TGFB2P61812 414 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 EXOSC9Q06265 439 aaKnown RBP5.47□□□□□ -1.53
SPG11-211ENST00000558561 FAM13CQ8NE31 585 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 ZNF526Q8TF50 670 aaPredicted RBP5.47□□□□□ -1.53
SPG11-211ENST00000558561 TINF2Q9BSI4 451 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 DDX21Q9NR30 783 aaKnown RBP eCLIP5.47□□□□□ -1.53
SPG11-211ENST00000558561 PIM2Q9P1W9 311 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 NRXN2Q9P2S2 1712 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 C10orf71Q711Q0 1435 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 COL4A1P02462 1669 aa5.47□□□□□ -1.53
SPG11-211ENST00000558561 PRR19A6NJB7 356 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 SOX9P48436 509 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 NASPP49321 788 aaPredicted RBP5.46□□□□□ -1.54
SPG11-211ENST00000558561 GNAI1P63096 354 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 ARSHQ5FYA8 562 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 FBXW10Q5XX13 1052 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 CLEC4GQ6UXB4 293 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 CCDC81Q6ZN84 652 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 FAM214BQ7L5A3 538 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 NBPF5PQ86XG9 351 aaPredicted RBP5.46□□□□□ -1.54
SPG11-211ENST00000558561 MFSD2AQ8NA29 543 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 GIMAP7Q8NHV1 300 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 FERD3LQ96RJ6 166 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 MIPEPQ99797 713 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 OSBPL1AQ9BXW6 950 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 IFT57Q9NWB7 429 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 BABAM1Q9NWV8 329 aa5.46□□□□□ -1.54
SPG11-211ENST00000558561 ABCC12Q96J65 1359 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 BCORQ6W2J9 1755 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 ERVV-1B6SEH8 477 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 H0YIN7 160 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 NTSR2O95665 410 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 EOMESO95936 686 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 TGFB1P01137 390 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 SRGNP10124 158 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 ATF4P18848 351 aaPredicted RBP5.45□□□□□ -1.54
SPG11-211ENST00000558561 YARSP54577 528 aaKnown RBP5.45□□□□□ -1.54
SPG11-211ENST00000558561 LMOD3Q0VAK6 560 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 TCIRG1Q13488 830 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 DALRD3Q5D0E6 543 aaKnown RBP5.45□□□□□ -1.54
SPG11-211ENST00000558561 LETMD1Q6P1Q0 360 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 CDH24Q86UP0 819 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 NLRP10Q86W26 655 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 SLFN12Q8IYM2 578 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 ATG4CQ96DT6 458 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 FAM89AQ96GI7 184 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 SPATA32Q96LK8 384 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 HEXIM2Q96MH2 286 aaKnown RBP5.45□□□□□ -1.54
SPG11-211ENST00000558561 KIF2CQ99661 725 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 ISCA1Q9BUE6 129 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 BRIP1Q9BX63 1249 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 GMIPQ9P107 970 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 ZNRF3Q9ULT6 936 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 U3KQE9 123 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 COL11A2P13942 1736 aaPredicted RBP5.45□□□□□ -1.54
SPG11-211ENST00000558561 ZNF521Q96K83 1311 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 FANCIQ9NVI1 1328 aa5.45□□□□□ -1.54
SPG11-211ENST00000558561 LAMB4A4D0S4 1761 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 KLRG2A4D1S0 409 aaPredicted RBP5.44□□□□□ -1.54
SPG11-211ENST00000558561 IGKV5-2P06315 115 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 HMGB2P26583 209 aaKnown RBP5.44□□□□□ -1.54
SPG11-211ENST00000558561 HOXA10P31260 410 aaPredicted RBP5.44□□□□□ -1.54
SPG11-211ENST00000558561 CYP27A1Q02318 531 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 GNL2Q13823 731 aaKnown RBP5.44□□□□□ -1.54
SPG11-211ENST00000558561 COL9A2Q14055 689 aaPredicted RBP5.44□□□□□ -1.54
SPG11-211ENST00000558561 TWISTNBQ3B726 338 aaPredicted RBP5.44□□□□□ -1.54
SPG11-211ENST00000558561 CYP27C1Q4G0S4 372 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 NAALADL2Q58DX5 795 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 SLC10A5Q5PT55 438 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 OVOS1Q6IE37 1185 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 KIF6Q6ZMV9 814 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 VPS37DQ86XT2 251 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 WDR63Q8IWG1 891 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 TTLL6Q8N841 843 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 FAM181AQ8N9Y4 354 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 CNBD1Q8NA66 436 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 BAHD1Q8TBE0 780 aaPredicted RBP5.44□□□□□ -1.54
SPG11-211ENST00000558561 PPP1R13LQ8WUF5 828 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 SEC16BQ96JE7 1060 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 MYD88Q99836 296 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 LRRC4CQ9HCJ2 640 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 TNNQ9UQP3 1299 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 LEMD3Q9Y2U8 911 aa5.44□□□□□ -1.54
SPG11-211ENST00000558561 SCN7AQ01118 1682 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 TNRC6CQ9HCJ0 1690 aaKnown RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 PI4KAP2A4QPH2 592 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 POLR2BP30876 1174 aaKnown RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 SLFN5Q08AF3 891 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 LRRFIP1Q32MZ4 808 aaKnown RBP5.43□□□□□ -1.54
SPG11-211ENST00000558561 CDCP2Q5VXM1 449 aa5.43□□□□□ -1.54
SPG11-211ENST00000558561 RUFY4Q6ZNE9 571 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms