RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 STIM2Q9P246 746 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 UBR3Q6ZT12 1888 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 FRMPD2Q68DX3 1309 aaPredicted RBP13.67□□□□□ -0.22
LDLR-205ENST00000557933 SHTN1A0MZ66 631 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 ECM2O94769 699 aaPredicted RBP13.67□□□□□ -0.22
LDLR-205ENST00000557933 INPP5BP32019 993 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 CCDC70Q6NSX1 233 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 KCNV1Q6PIU1 500 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 KCNK18Q7Z418 384 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 TLR10Q9BXR5 811 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 NDST4Q9H3R1 872 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 TCP11L1Q9NUJ3 509 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 EIF3HO15372 352 aaKnown RBP eCLIP13.67□□□□□ -0.22
LDLR-205ENST00000557933 RPS6KA5O75582 802 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 RHOBTB3O94955 611 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 CCNE1P24864 410 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 ADAT2Q7Z6V5 191 aaKnown RBP13.67□□□□□ -0.22
LDLR-205ENST00000557933 TGFBRAP1Q8WUH2 860 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 AP1M1Q9BXS5 423 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 THAP9Q9H5L6 903 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 KBTBD4Q9NVX7 518 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 HYOU1Q9Y4L1 999 aa13.67□□□□□ -0.22
LDLR-205ENST00000557933 MYMKA6NI61 221 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 USO1O60763 962 aaKnown RBP13.66□□□□□ -0.22
LDLR-205ENST00000557933 HSF2BPO75031 334 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 PALMO75781 387 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 DDAH1O94760 285 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 EFCAB13Q8IY85 973 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 COA7Q96BR5 231 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 TRIM31Q9BZY9 425 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 VIPAS39Q9H9C1 493 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 LRRC4CQ9HCJ2 640 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 ADAMTS1Q9UHI8 967 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 NPHP3-ACAD11A0A0J9YXS1 232 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 A0A1W2PQC6 194 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 ZNF233A6NK53 670 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 TDP2O95551 362 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 TSPY3P0CV98 308 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 TSPY8P0CW00 308 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 HNRNPH1P31943 449 aaKnown RBP13.66□□□□□ -0.22
LDLR-205ENST00000557933 POLR2FP61218 127 aaKnown RBP13.66□□□□□ -0.22
LDLR-205ENST00000557933 ITPK1Q13572 414 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 KRT27Q7Z3Y8 459 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 CD248Q9HCU0 757 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 MINPP1Q9UNW1 487 aa13.66□□□□□ -0.22
LDLR-205ENST00000557933 NID2Q14112 1375 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 HDLBPQ00341 1268 aaKnown RBP13.65□□□□□ -0.22
LDLR-205ENST00000557933 PPFIA1Q13136 1202 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 MKRN4PQ13434 485 aaPredicted RBP13.65□□□□□ -0.22
LDLR-205ENST00000557933 DZIP1Q86YF9 867 aaKnown RBP13.65□□□□□ -0.22
LDLR-205ENST00000557933 EHBP1Q8NDI1 1231 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 TRIM58Q8NG06 486 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 TBCKQ8TEA7 893 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 SH3RF3Q8TEJ3 882 aaPredicted RBP13.65□□□□□ -0.22
LDLR-205ENST00000557933 LRP5O75197 1615 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 KCNQ2O43526 872 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 CALM1P0DP23 149 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 CALM2P0DP24 149 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 CALM3P0DP25 149 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 KLRC1P26715 233 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 TMOD1P28289 359 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 PAFAH1B1P43034 410 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 IFT88Q13099 833 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 RAPGEF1Q13905 1077 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 SLC27A3Q5K4L6 730 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 NAA35Q5VZE5 725 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 TBC1D5Q92609 795 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 JPH2Q9BR39 696 aaPredicted RBP13.65□□□□□ -0.22
LDLR-205ENST00000557933 MAD2L2Q9UI95 211 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 ANAPC4Q9UJX5 808 aa13.65□□□□□ -0.22
LDLR-205ENST00000557933 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.65□□□□□ -0.228e-10■□□□□ 8.4
LDLR-205ENST00000557933 FLT1P17948 1338 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 A0A087WUV0 522 aaPredicted RBP13.64□□□□□ -0.23
LDLR-205ENST00000557933 SMCO2A6NFE2 343 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 KLRF2D3W0D1 207 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 NTSR2O95665 410 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 CEP85LQ5SZL2 805 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 CFAP58Q5T655 872 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 KLHDC7AQ5VTJ3 777 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 FAM133AQ8N9E0 248 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 PIGSQ96S52 555 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 MMTAG2Q9BU76 263 aaKnown RBP13.64□□□□□ -0.23
LDLR-205ENST00000557933 CRNKL1Q9BZJ0 848 aaKnown RBP13.64□□□□□ -0.23
LDLR-205ENST00000557933 BCS1LQ9Y276 419 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 TARSL2A2RTX5 802 aaKnown RBP13.64□□□□□ -0.23
LDLR-205ENST00000557933 SLC37A4O43826 429 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 ACTN1P12814 892 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 COPB2P35606 906 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 ACTN3Q08043 901 aaPredicted RBP13.64□□□□□ -0.23
LDLR-205ENST00000557933 SPRED3Q2MJR0 410 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 VWA3BQ502W6 1294 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 BCAS3Q9H6U6 928 aa13.64□□□□□ -0.23
LDLR-205ENST00000557933 E7EVH7 732 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 OR52Z1P0C646 297 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 KIF5BP33176 963 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CT47A1Q5JQC4 288 aaPredicted RBP13.63□□□□□ -0.23
LDLR-205ENST00000557933 ALS2CR12Q96Q35 445 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 PLAGL2Q9UPG8 496 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 SMIM23A6NLE4 172 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 DCDC2CA8MYV0 355 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms