RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 RAD50Q92878 1312 aa13.3□□□□□ -0.28
VPS33B-204ENST00000554660 FAM86C2PA6NEL3 165 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 TLL1O43897 1013 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 LPXNO60711 386 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 ARIH2O95376 493 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 HOXD11P31277 338 aaPredicted RBP13.29□□□□□ -0.28
VPS33B-204ENST00000554660 NOVP48745 357 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 PDE4DQ08499 809 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 CUL4AQ13619 759 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 NFRKBQ6P4R8 1299 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 RNF207Q6ZRF8 634 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 PHOSPHO2Q8TCD6 241 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 HLA-CQ95604 372 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 TOMM22Q9NS69 142 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 HCN4Q9Y3Q4 1203 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 TTC41PQ6P2S7 1318 aa13.29□□□□□ -0.28
VPS33B-204ENST00000554660 LOC102724159A0A0B4J2E5 919 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 A6NJR5 290 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 KIF28PB7ZC32 967 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 EDNRBP24530 442 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 KCNJ6P48051 423 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 WDR5P61964 334 aaKnown RBP13.28□□□□□ -0.28
VPS33B-204ENST00000554660 RPS6P62753 249 aaKnown RBP13.28□□□□□ -0.28
VPS33B-204ENST00000554660 DEFB103AP81534 67 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 BFSP2Q13515 415 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 PWP2Q15269 919 aaKnown RBP13.28□□□□□ -0.28
VPS33B-204ENST00000554660 BRDTQ58F21 947 aaPredicted RBP13.28□□□□□ -0.28
VPS33B-204ENST00000554660 RRP12Q5JTH9 1297 aaKnown RBP13.28□□□□□ -0.28
VPS33B-204ENST00000554660 BTNL9Q6UXG8 535 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 SCFD2Q8WU76 684 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 TMEM47Q9BQJ4 181 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 C11orf16Q9NQ32 467 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 MTUS1Q9ULD2 1270 aa13.28□□□□□ -0.28
VPS33B-204ENST00000554660 TET1Q8NFU7 2136 aa13.27□□□□□ -0.28
VPS33B-204ENST00000554660 NKRFO15226 690 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS33B-204ENST00000554660 BAIAP3O94812 1187 aa13.27□□□□□ -0.29
VPS33B-204ENST00000554660 TXNP10599 105 aaKnown RBP13.27□□□□□ -0.29
VPS33B-204ENST00000554660 PDHBP11177 359 aa13.27□□□□□ -0.29
VPS33B-204ENST00000554660 CCDC173Q0VFZ6 552 aa13.27□□□□□ -0.29
VPS33B-204ENST00000554660 TMEM31Q5JXX7 168 aa13.27□□□□□ -0.29
VPS33B-204ENST00000554660 CTAGE1Q96RT6 745 aa13.27□□□□□ -0.29
VPS33B-204ENST00000554660 ORC4O43929 436 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 TOP1P11387 765 aaKnown RBP13.26□□□□□ -0.29
VPS33B-204ENST00000554660 CHMLP26374 656 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 PTPN11Q06124 597 aaPredicted RBP13.26□□□□□ -0.29
VPS33B-204ENST00000554660 GPNMBQ14956 572 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 PTGISQ16647 500 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 TCTN1Q2MV58 587 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 USH1GQ495M9 461 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 HS1BP3Q53T59 392 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 GDF6Q6KF10 455 aaPredicted RBP13.26□□□□□ -0.29
VPS33B-204ENST00000554660 LRRC8DQ7L1W4 858 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 AFG1LQ8WV93 481 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 DHX38Q92620 1227 aaKnown RBP13.26□□□□□ -0.29
VPS33B-204ENST00000554660 PPP1R9BQ96SB3 815 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 CD320Q9NPF0 282 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 RTN4Q9NQC3 1192 aaKnown RBP13.26□□□□□ -0.29
VPS33B-204ENST00000554660 ANAPC4Q9UJX5 808 aa13.26□□□□□ -0.29
VPS33B-204ENST00000554660 WDR19Q8NEZ3 1342 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 KPNA6O60684 536 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 MBD3O95983 291 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 MMP3P08254 477 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 CCDC155Q8N6L0 562 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 DNERQ8NFT8 737 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 CAGE1Q8TC20 777 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 AFAP1L1Q8TED9 768 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 MPHOSPH6Q99547 160 aaKnown RBP13.25□□□□□ -0.29
VPS33B-204ENST00000554660 ZBED2Q9BTP6 218 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 GZF1Q9H116 711 aaPredicted RBP13.25□□□□□ -0.29
VPS33B-204ENST00000554660 CPVLQ9H3G5 476 aa13.25□□□□□ -0.29
VPS33B-204ENST00000554660 NBNO60934 754 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 FGRP09769 529 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 SELPP16109 830 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 ZNF543Q08ER8 600 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 LY6KQ17RY6 165 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 FAM117BQ6P1L5 589 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 CHST3Q7LGC8 479 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 ANP32BQ92688 251 aaKnown RBP13.24□□□□□ -0.29
VPS33B-204ENST00000554660 KAT2BQ92831 832 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 SUGCTQ9HAC7 445 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 LMBRD1Q9NUN5 540 aa13.24□□□□□ -0.29
VPS33B-204ENST00000554660 SIP14410 1827 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 GOLGA8HP0CJ92 632 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 PDIA4P13667 645 aaKnown RBP13.23□□□□□ -0.29
VPS33B-204ENST00000554660 HAND2P61296 217 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 ARHGAP1Q07960 439 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 CCDC62Q6P9F0 684 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 CNKSR3Q6P9H4 555 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 SEPT14Q6ZU15 432 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 SESTD1Q86VW0 696 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 FAM227BQ96M60 508 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 UBE2ZQ9H832 354 aaPredicted RBP13.23□□□□□ -0.29
VPS33B-204ENST00000554660 COL20A1Q9P218 1284 aa13.23□□□□□ -0.29
VPS33B-204ENST00000554660 TRIP12Q14669 1992 aaPredicted RBP13.22□□□□□ -0.29
VPS33B-204ENST00000554660 A0A0D9SFI3 127 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 LINC01553A4QN01 128 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 GJB5O95377 273 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 BRD1O95696 1058 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 GH1P01241 217 aa13.22□□□□□ -0.29
VPS33B-204ENST00000554660 FGAP02671 866 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms