RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 KCNV1Q6PIU1 500 aa14.79□□□□□ -0.04
LINC00643-202ENST00000553426 CCDC155Q8N6L0 562 aa14.79□□□□□ -0.04
LINC00643-202ENST00000553426 MTMR8Q96EF0 704 aa14.79□□□□□ -0.04
LINC00643-202ENST00000553426 SCLYQ96I15 445 aa14.79□□□□□ -0.04
LINC00643-202ENST00000553426 GCOM1H8Y6P7 765 aaPredicted RBP14.78□□□□□ -0.04
LINC00643-202ENST00000553426 PITPNM1O00562 1244 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 MMP3P08254 477 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 POLR2MP0CAP2 368 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 MYCLP12524 364 aaPredicted RBP14.78□□□□□ -0.04
LINC00643-202ENST00000553426 PBX2P40425 430 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 ARHGAP1Q07960 439 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 CASC1Q6TDU7 716 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 STOX1Q6ZVD7 989 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 MAP4K1Q92918 833 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 PIGSQ96S52 555 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 KATNAL1Q9BW62 490 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 RIOX1Q9H6W3 641 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 SLC28A3Q9HAS3 691 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 PRDM6Q9NQX0 595 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 CXXC1Q9P0U4 656 aaPredicted RBP14.78□□□□□ -0.04
LINC00643-202ENST00000553426 DDX41Q9UJV9 622 aaKnown RBP14.78□□□□□ -0.04
LINC00643-202ENST00000553426 MYH6P13533 1939 aa14.78□□□□□ -0.04
LINC00643-202ENST00000553426 PNMA6FA0A0J9YX94 578 aa14.77□□□□□ -0.05
LINC00643-202ENST00000553426 HOXA13P31271 388 aaPredicted RBP14.77□□□□□ -0.05
LINC00643-202ENST00000553426 KIF5BP33176 963 aa14.77□□□□□ -0.05
LINC00643-202ENST00000553426 GHRHRQ02643 423 aa14.77□□□□□ -0.05
LINC00643-202ENST00000553426 TROAPQ12815 778 aa14.77□□□□□ -0.05
LINC00643-202ENST00000553426 PTGISQ16647 500 aa14.77□□□□□ -0.05
LINC00643-202ENST00000553426 DEFB128Q7Z7B8 93 aa14.77□□□□□ -0.05
LINC00643-202ENST00000553426 DHX37Q8IY37 1157 aaKnown RBP14.77□□□□□ -0.05
LINC00643-202ENST00000553426 CTCFLQ8NI51 663 aaPredicted RBP14.77□□□□□ -0.05
LINC00643-202ENST00000553426 EMID1Q96A84 441 aaPredicted RBP14.77□□□□□ -0.05
LINC00643-202ENST00000553426 PDCD2LQ9BRP1 358 aa14.77□□□□□ -0.05
LINC00643-202ENST00000553426 RBM8AQ9Y5S9 174 aaKnown RBP14.77□□□□□ -0.05
LINC00643-202ENST00000553426 PPP1R11O60927 126 aaPredicted RBP14.76□□□□□ -0.05
LINC00643-202ENST00000553426 TGFB3P10600 412 aa14.76□□□□□ -0.05
LINC00643-202ENST00000553426 CCND2P30279 289 aa14.76□□□□□ -0.05
LINC00643-202ENST00000553426 TMTC2Q8N394 836 aa14.76□□□□□ -0.05
LINC00643-202ENST00000553426 C7orf31Q8N865 590 aa14.76□□□□□ -0.05
LINC00643-202ENST00000553426 CAGE1Q8TC20 777 aa14.76□□□□□ -0.05
LINC00643-202ENST00000553426 MTA3Q9BTC8 594 aa14.76□□□□□ -0.05
LINC00643-202ENST00000553426 FTOQ9C0B1 505 aaKnown RBP eCLIP14.76□□□□□ -0.05
LINC00643-202ENST00000553426 SCN10AQ9Y5Y9 1956 aa14.76□□□□□ -0.05
LINC00643-202ENST00000553426 OPLAHO14841 1288 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 IQCF3P0C7M6 154 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 ATP2A2P16615 1042 aaKnown RBP14.75□□□□□ -0.05
LINC00643-202ENST00000553426 MCM5P33992 734 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 PGM5Q15124 567 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 GNPTABQ3T906 1256 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 NFXL1Q6ZNB6 911 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 VSIG10LQ86VR7 867 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 SESTD1Q86VW0 696 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 FCHSD1Q86WN1 690 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 MB21D2Q8IYB1 491 aaPredicted RBP14.75□□□□□ -0.05
LINC00643-202ENST00000553426 PPTC7Q8NI37 304 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 IGDCC4Q8TDY8 1250 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 CUL5Q93034 780 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 RRP36Q96EU6 259 aaKnown RBP14.75□□□□□ -0.05
LINC00643-202ENST00000553426 MAP3K14Q99558 947 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 LZTS2Q9BRK4 669 aa14.75□□□□□ -0.05
LINC00643-202ENST00000553426 SEC63Q9UGP8 760 aaKnown RBP14.75□□□□□ -0.05
LINC00643-202ENST00000553426 CCDC69A6NI79 296 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 PPFIA4O75335 1185 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 DDAH1O94760 285 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 PARNO95453 639 aaKnown RBP14.74□□□□□ -0.05
LINC00643-202ENST00000553426 GNAQP50148 359 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 PPP2R2DQ66LE6 453 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 ZNF654Q8IZM8 581 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 AFAP1L1Q8TED9 768 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 PPP1R13LQ8WUF5 828 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 PIBF1Q8WXW3 757 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 SPATA33Q96N06 139 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 ALG1Q9BT22 464 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 NKX2-4Q9H2Z4 354 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 MLXIPQ9HAP2 919 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 SENP2Q9HC62 589 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 PCDHA11Q9Y5I1 949 aa14.74□□□□□ -0.05
LINC00643-202ENST00000553426 KIF28PB7ZC32 967 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 PRC1O43663 620 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 CYTH3O43739 400 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 STAM2O75886 525 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 GGPS1O95749 300 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 SMARCA1P28370 1054 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 PSEN2P49810 448 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 ANTXR2P58335 489 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 MFSD10Q14728 455 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 KIAA0753Q2KHM9 967 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 CELF3Q5SZQ8 465 aaKnown RBP14.73□□□□□ -0.05
LINC00643-202ENST00000553426 MYSM1Q5VVJ2 828 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 GDF6Q6KF10 455 aaPredicted RBP14.73□□□□□ -0.05
LINC00643-202ENST00000553426 SMARCC2Q8TAQ2 1214 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 KAT2BQ92831 832 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 TMEM87BQ96K49 555 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 SLC9A7Q96T83 725 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 SPZ1Q9BXG8 430 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 PRDM12Q9H4Q4 367 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 GTF2IRD1Q9UHL9 959 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 TAF6LQ9Y6J9 622 aa14.73□□□□□ -0.05
LINC00643-202ENST00000553426 KIAA1217Q5T5P2 1943 aa14.72□□□□□ -0.05
LINC00643-202ENST00000553426 NOP56O00567 594 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms