RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ZNF444Q8N0Y2 327 aaPredicted RBP12.49□□□□□ -0.41
VPS29-208ENST00000550267 TRERF1Q96PN7 1200 aa12.49□□□□□ -0.41
VPS29-208ENST00000550267 Q9Y3F1 56 aa12.49□□□□□ -0.41
VPS29-208ENST00000550267 RAB11FIP3O75154 756 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 TTLL1O95922 423 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 FDX1P10109 184 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 ALAS1P13196 640 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 RPIAP49247 311 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 STAT2P52630 851 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 SNAP25P60880 206 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 IKQ13123 557 aaPredicted RBP12.48□□□□□ -0.41
VPS29-208ENST00000550267 MUM1L1Q5H9M0 696 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 SMYD5Q6GMV2 418 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 GIMAP6Q6P9H5 292 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 KIAA1211Q6ZU35 1233 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 SPRED2Q7Z698 418 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 RPAP2Q8IXW5 612 aaPredicted RBP12.48□□□□□ -0.41
VPS29-208ENST00000550267 PPP1R13LQ8WUF5 828 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 HLA-CQ95604 372 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 PURBQ96QR8 312 aaKnown RBP12.48□□□□□ -0.41
VPS29-208ENST00000550267 SLC9A7Q96T83 725 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 EPB41L4AQ9HCS5 686 aaPredicted RBP12.48□□□□□ -0.41
VPS29-208ENST00000550267 C11orf16Q9NQ32 467 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 SYNPO2Q9UMS6 1093 aa12.48□□□□□ -0.41
VPS29-208ENST00000550267 CCER2I3L3R5 266 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 HMMRO75330 724 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 MYL3P08590 195 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 SUPT20HL2P0C7V6 817 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 ACTN1P12814 892 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 GRB10Q13322 594 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 TKFCQ3LXA3 575 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 FAM160B2Q86V87 743 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 HERC6Q8IVU3 1022 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 STAG1Q8WVM7 1258 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 OSBP2Q969R2 916 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 VTA1Q9NP79 307 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 POLR3EQ9NVU0 708 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 CYP39A1Q9NYL5 469 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 PKD2L1Q9P0L9 805 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 BDP1A6H8Y1 2624 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 MYH7P12883 1935 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 MYH4Q9Y623 1939 aa12.47□□□□□ -0.41
VPS29-208ENST00000550267 GPR37L1O60883 481 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 TDO2P48775 406 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 PURAQ00577 322 aaKnown RBP12.46□□□□□ -0.41
VPS29-208ENST00000550267 DUSP28Q4G0W2 176 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 FAM47CQ5HY64 1035 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 NEDD1Q8NHV4 660 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 PHOSPHO2Q8TCD6 241 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 CHURC1Q8WUH1 139 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 THAP11Q96EK4 314 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 FTOQ9C0B1 505 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS29-208ENST00000550267 ZNF287Q9HBT7 754 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 CD320Q9NPF0 282 aa12.46□□□□□ -0.41
VPS29-208ENST00000550267 PLIN4Q96Q06 1357 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 KIF28PB7ZC32 967 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 GPAA1O43292 621 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 LPXNO60711 386 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 IQCF3P0C7M6 154 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 TSPY3P0CV98 308 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 TSPY8P0CW00 308 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 FECHP22830 423 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 MCCP23508 829 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 RFC2P35250 354 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 SLC1A4P43007 532 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 NBPF20Q3BBV1 942 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 NSMFQ6X4W1 530 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 KCTD1Q719H9 257 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 RASGRP2Q7LDG7 609 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 MORC4Q8TE76 937 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 APPBP2Q92624 585 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 GMCL1Q96IK5 515 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 MTG1Q9BT17 334 aaPredicted RBP12.45□□□□□ -0.42
VPS29-208ENST00000550267 WDR11Q9BZH6 1224 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 AAASQ9NRG9 546 aa12.45□□□□□ -0.42
VPS29-208ENST00000550267 COL4A4P53420 1690 aaPredicted RBP12.45□□□□□ -0.42
VPS29-208ENST00000550267 SCN5AQ14524 2016 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 LCHNA4D1U4 455 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 M0R2C6 588 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 SMARCA5O60264 1052 aaPredicted RBP12.44□□□□□ -0.42
VPS29-208ENST00000550267 APPP05067 770 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 CPT1AP50416 773 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 ALDH5A1P51649 535 aaPredicted RBP12.44□□□□□ -0.42
VPS29-208ENST00000550267 TFAP4Q01664 338 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 TMCO2Q7Z6W1 182 aaPredicted RBP12.44□□□□□ -0.42
VPS29-208ENST00000550267 ALYREFQ86V81 257 aaKnown RBP12.44□□□□□ -0.42
VPS29-208ENST00000550267 KBTBD3Q8NAB2 608 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 RDH13Q8NBN7 331 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 RETREG2Q8NC44 543 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 OR6J1Q8NGC5 347 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 GDPD5Q8WTR4 605 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 CCPG1Q9ULG6 757 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 PRR12Q9ULL5 1215 aa12.44□□□□□ -0.42
VPS29-208ENST00000550267 PI4K2BG5E9Z4 385 aa12.43□□□□□ -0.42
VPS29-208ENST00000550267 GPR37O15354 613 aa12.43□□□□□ -0.42
VPS29-208ENST00000550267 RNF113AO15541 343 aaKnown RBP12.43□□□□□ -0.42
VPS29-208ENST00000550267 PLA2G6O60733 806 aa12.43□□□□□ -0.42
VPS29-208ENST00000550267 FUT2Q10981 343 aa12.43□□□□□ -0.42
VPS29-208ENST00000550267 BAATQ14032 418 aaPredicted RBP12.43□□□□□ -0.42
VPS29-208ENST00000550267 RCSD1Q6JBY9 416 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms