RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 ZNF576Q9H609 170 aa16.69■□□□□ 0.26
COL2A1-209ENST00000546974 SCN5AQ14524 2016 aa16.69■□□□□ 0.26
COL2A1-209ENST00000546974 VCANP13611 3396 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 GBF1Q92538 1859 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 PNMA6FA0A0J9YX94 578 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 GRXCR1A8MXD5 290 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 MMP3P08254 477 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 FOSL2P15408 326 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 CASTP20810 708 aaKnown RBP16.68■□□□□ 0.26
COL2A1-209ENST00000546974 GRIN2CQ14957 1233 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 OTOP2Q7RTS6 562 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 VWCEQ96DN2 955 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 SCLYQ96I15 445 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 MAP3K14Q99558 947 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 PDCD2LQ9BRP1 358 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 MTA3Q9BTC8 594 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 CXXC1Q9P0U4 656 aaPredicted RBP16.68■□□□□ 0.26
COL2A1-209ENST00000546974 MRVI1Q9Y6F6 885 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 CUL9Q8IWT3 2517 aa16.68■□□□□ 0.26
COL2A1-209ENST00000546974 CHD7Q9P2D1 2997 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 PITPNM1O00562 1244 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 PFKMP08237 780 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 PBX2P40425 430 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 LAMC2Q13753 1193 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 RAB30Q15771 203 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 DGKDQ16760 1214 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 KCNV1Q6PIU1 500 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 SESTD1Q86VW0 696 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 MAFAQ8NHW3 353 aaPredicted RBP16.67■□□□□ 0.26
COL2A1-209ENST00000546974 MSRAQ9UJ68 235 aa16.67■□□□□ 0.26
COL2A1-209ENST00000546974 GCOM1H8Y6P7 765 aaPredicted RBP16.66■□□□□ 0.26
COL2A1-209ENST00000546974 POLR2MP0CAP2 368 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 MYCLP12524 364 aaPredicted RBP16.66■□□□□ 0.26
COL2A1-209ENST00000546974 HOXA13P31271 388 aaPredicted RBP16.66■□□□□ 0.26
COL2A1-209ENST00000546974 RFC2P35250 354 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 BFSP2Q13515 415 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 PGM5Q15124 567 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 CASC1Q6TDU7 716 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 VSIG10LQ86VR7 867 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.66■□□□□ 0.26
COL2A1-209ENST00000546974 PPP1R13LQ8WUF5 828 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 KAT2BQ92831 832 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 LSG1Q9H089 658 aaKnown RBP16.66■□□□□ 0.26
COL2A1-209ENST00000546974 LY9Q9HBG7 655 aa16.66■□□□□ 0.26
COL2A1-209ENST00000546974 SPTBN5Q9NRC6 3674 aaKnown RBP16.66■□□□□ 0.26
COL2A1-209ENST00000546974 TANC1Q9C0D5 1861 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 RGS20O76081 388 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 DDAH1O94760 285 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 TGFB3P10600 412 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 SMARCA1P28370 1054 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 MCM5P33992 734 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 DHX37Q8IY37 1157 aaKnown RBP16.65■□□□□ 0.26
COL2A1-209ENST00000546974 ZNF654Q8IZM8 581 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 TMTC2Q8N394 836 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 RETREG2Q8NC44 543 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 TET1Q8NFU7 2136 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 PPTC7Q8NI37 304 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 ESYT1Q9BSJ8 1104 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 NOD1Q9Y239 953 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 SLC4A7Q9Y6M7 1214 aa16.65■□□□□ 0.26
COL2A1-209ENST00000546974 PRC1O43663 620 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 IQCF3P0C7M6 154 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 CCND2P30279 289 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 KIF5BP33176 963 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 CHMP4BP1P59074 171 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 PTGISQ16647 500 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 MYSM1Q5VVJ2 828 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 CTCFLQ8NI51 663 aaPredicted RBP16.64■□□□□ 0.25
COL2A1-209ENST00000546974 TMEM87BQ96K49 555 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 KATNAL1Q9BW62 490 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 SPZ1Q9BXG8 430 aa16.64■□□□□ 0.25
COL2A1-209ENST00000546974 ZBBXA8MT70 800 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 SH2B2O14492 632 aaPredicted RBP16.63■□□□□ 0.25
COL2A1-209ENST00000546974 SLC27A2O14975 620 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 ACTN1P12814 892 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 HOXD8P13378 290 aaPredicted RBP16.63■□□□□ 0.25
COL2A1-209ENST00000546974 PSEN2P49810 448 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 GNAQP50148 359 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 NECTIN1Q15223 517 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 CELF3Q5SZQ8 465 aaKnown RBP16.63■□□□□ 0.25
COL2A1-209ENST00000546974 GDF6Q6KF10 455 aaPredicted RBP16.63■□□□□ 0.25
COL2A1-209ENST00000546974 DEFB128Q7Z7B8 93 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 FCHSD1Q86WN1 690 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 CCDC155Q8N6L0 562 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 IL31RAQ8NI17 732 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 CAGE1Q8TC20 777 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 LZTS2Q9BRK4 669 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 GTF2IRD1Q9UHL9 959 aa16.63■□□□□ 0.25
COL2A1-209ENST00000546974 CCDC69A6NI79 296 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 HAS3O00219 553 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 PPFIA4O75335 1185 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 STAM2O75886 525 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 F2P00734 622 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 LIFRP42702 1097 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 CREB3L3Q68CJ9 461 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 AFAP1L1Q8TED9 768 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 PIBF1Q8WXW3 757 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 RRP36Q96EU6 259 aaKnown RBP16.62■□□□□ 0.25
COL2A1-209ENST00000546974 CTAGE1Q96RT6 745 aa16.62■□□□□ 0.25
COL2A1-209ENST00000546974 GAS2L1Q99501 681 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms