RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 NEDD4P46934 1319 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 A0A087WUV0 522 aaPredicted RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 OPA1O60313 960 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 EVI5O60447 810 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 NPM3O75607 178 aaKnown RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 DEXIO95424 95 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 BAG3O95817 575 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 MYL1P05976 194 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 PLCG2P16885 1265 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 IFNAR1P17181 557 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 IRX3P78415 501 aaPredicted RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 APBA1Q02410 837 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 NOSTRINQ8IVI9 506 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 TEX11Q8IYF3 940 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 RETREG2Q8NC44 543 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 SPATA20Q8TB22 786 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 NOC3LQ8WTT2 800 aaKnown RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 COA7Q96BR5 231 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 SEC62Q99442 399 aaKnown RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 MAP3K14Q99558 947 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 NUP58Q9BVL2 599 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.62□□□□□ -0.55
CHFR-219ENST00000541341 RNF41Q9H4P4 317 aaPredicted RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 NCOA5Q9HCD5 579 aaKnown RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 GEMIN8Q9NWZ8 242 aaKnown RBP11.62□□□□□ -0.55
CHFR-219ENST00000541341 AATFQ9NY61 560 aaKnown RBP eCLIP11.62□□□□□ -0.55
CHFR-219ENST00000541341 AGTPBP1Q9UPW5 1226 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 ADGRG1Q9Y653 693 aa11.62□□□□□ -0.55
CHFR-219ENST00000541341 ATXN2Q99700 1313 aaKnown RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 DNAH12Q6ZR08 3092 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 COL6A3P12111 3177 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 MAGEB6P1A0A0J9YX57 407 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 ANO9A1A5B4 782 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 M0R2C6 588 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 SOX1O00570 391 aaPredicted RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 GDF11O95390 407 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 CPP00450 1065 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 JAG1P78504 1218 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 MDM2Q00987 491 aaPredicted RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 GUCY1B3Q02153 619 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 ITIH3Q06033 890 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 ICE2Q659A1 982 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 SHC4Q6S5L8 630 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 CCDC129Q6ZRS4 1044 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 MICALCLQ6ZW33 695 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 MAPKAPK5Q8IW41 473 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 SUGP1Q8IWZ8 645 aaKnown RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 C7orf61Q8IZ16 206 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 FAM177A1Q8N128 213 aaPredicted RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 IGSF22Q8N9C0 903 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 AFAP1L1Q8TED9 768 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 LRCH3Q96II8 777 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 STRBPQ96SI9 672 aaKnown RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 CRACR2AQ9BSW2 395 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 LRRC2Q9BYS8 371 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 NACAP1Q9BZK3 213 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 TSGA10Q9BZW7 698 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.61□□□□□ -0.553e-11■■■■■ 30.4
CHFR-219ENST00000541341 HSD3B7Q9H2F3 369 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 VPS18Q9P253 973 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 RSPH14Q9UHP6 348 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 SAP30BPQ9UHR5 308 aaKnown RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 ZMYND8Q9ULU4 1186 aaPredicted RBP11.61□□□□□ -0.55
CHFR-219ENST00000541341 TAF6LQ9Y6J9 622 aa11.61□□□□□ -0.55
CHFR-219ENST00000541341 LRRC10BA6NIK2 292 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 GPAA1O43292 621 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 KRT86O43790 486 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 MBD4O95243 580 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 FGAP02671 866 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 PCP11498 1178 aaKnown RBP11.6□□□□□ -0.55
CHFR-219ENST00000541341 ATP1A3P13637 1013 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 SYN1P17600 705 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 CYP2B6P20813 491 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 GTF2A1P52655 376 aaPredicted RBP11.6□□□□□ -0.55
CHFR-219ENST00000541341 CORO7P57737 925 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 DYNLL1P63167 89 aaKnown RBP11.6□□□□□ -0.55
CHFR-219ENST00000541341 AKAP17AQ02040 695 aaKnown RBP11.6□□□□□ -0.55
CHFR-219ENST00000541341 MAP3K10Q02779 954 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 PNOCQ13519 176 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 MTMR2Q13614 643 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 NFXL1Q6ZNB6 911 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 B4GALNT4Q76KP1 1039 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 CCDC91Q7Z6B0 441 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 METTL16Q86W50 562 aaKnown RBP11.6□□□□□ -0.55
CHFR-219ENST00000541341 LCORLQ8N3X6 602 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 CCDC155Q8N6L0 562 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 MIGA1Q8NAN2 632 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 ZNF280CQ8ND82 737 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 NEK11Q8NG66 645 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 DHX58Q96C10 678 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 FTOQ9C0B1 505 aaKnown RBP eCLIP11.6□□□□□ -0.55
CHFR-219ENST00000541341 ASCC2Q9H1I8 757 aaPredicted RBP11.6□□□□□ -0.55
CHFR-219ENST00000541341 MAN1B1Q9UKM7 699 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 PNMA3Q9UL41 463 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 MYO6Q9UM54 1294 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 NR2E3Q9Y5X4 410 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 SLC12A7Q9Y666 1083 aa11.6□□□□□ -0.55
CHFR-219ENST00000541341 GREB1LQ9C091 1923 aaPredicted RBP11.59□□□□□ -0.55
CHFR-219ENST00000541341 ZNFX1Q9P2E3 1918 aaKnown RBP11.59□□□□□ -0.55
CHFR-219ENST00000541341 GOLGA8AA7E2F4 631 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms