RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 IPPQ9Y573 584 aa6.62□□□□□ -1.35
PRKDC-209ENST00000540819 GRIN3BO60391 1043 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 SNUPNO95149 360 aaKnown RBP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 NAT2P11245 290 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 BPIP17213 487 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 GEMIN4P57678 1058 aaKnown RBP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 SLC7A5Q01650 507 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 ZNF252P-AS1Q0IIN9 211 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 MLECQ14165 292 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 PUM3Q15397 648 aaKnown RBP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 SEPT7Q16181 437 aaKnown RBP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 MLANAQ16655 118 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 SLC4A8Q2Y0W8 1093 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 HYIQ5T013 277 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 GPR158Q5T848 1215 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 RASIP1Q5U651 963 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 LLGL2Q6P1M3 1020 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 C1orf228Q6PIY5 440 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 MMS22LQ6ZRQ5 1243 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 OR2W6PQ8NHA6 318 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 ENOX1Q8TC92 643 aaKnown RBP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 COG1Q8WTW3 980 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 KLHL6Q8WZ60 621 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 TNIP3Q96KP6 325 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 NLRC4Q9NPP4 1024 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 DDX21Q9NR30 783 aaKnown RBP eCLIP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 KLHL11Q9NVR0 708 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 SUCOQ9UBS9 1254 aaKnown RBP6.61□□□□□ -1.35
PRKDC-209ENST00000540819 PGAP2Q9UHJ9 254 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 PHTF1Q9UMS5 762 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 GIT1Q9Y2X7 761 aa6.61□□□□□ -1.35
PRKDC-209ENST00000540819 FRMPD2Q68DX3 1309 aaPredicted RBP6.6□□□□□ -1.35
PRKDC-209ENST00000540819 PRR36Q9H6K5 1346 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 K7ESF4 209 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 NEMP1O14524 444 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 NBNO60934 754 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 PF4V1P10720 104 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 PYGMP11217 842 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 CCND1P24385 295 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 FLT3P36888 993 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 STK3Q13188 491 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 GRB10Q13322 594 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 BIRC3Q13489 604 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 GRM3Q14832 879 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 ZYXQ15942 572 aaKnown RBP6.6□□□□□ -1.35
PRKDC-209ENST00000540819 SV2CQ496J9 727 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 TMEM240Q5SV17 173 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 MPRIPQ6WCQ1 1025 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 BHLHE22Q8NFJ8 381 aaPredicted RBP6.6□□□□□ -1.35
PRKDC-209ENST00000540819 CXorf38Q8TB03 319 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 GRIN3AQ8TCU5 1115 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 GAL3ST3Q96A11 431 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 SKA1Q96BD8 255 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 ELMO3Q96BJ8 720 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 MPP4Q96JB8 637 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 GPR101Q96P66 508 aaPredicted RBP6.6□□□□□ -1.35
PRKDC-209ENST00000540819 FOXQ1Q9C009 403 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 CSRNP2Q9H175 543 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 C9orf78Q9NZ63 289 aaPredicted RBP6.6□□□□□ -1.35
PRKDC-209ENST00000540819 PCDHA4Q9UN74 947 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 FAM50BQ9Y247 325 aa6.6□□□□□ -1.35
PRKDC-209ENST00000540819 TNPO3Q9Y5L0 923 aaKnown RBP6.6□□□□□ -1.35
PRKDC-209ENST00000540819 MORC2Q9Y6X9 1032 aaPredicted RBP6.6□□□□□ -1.35
PRKDC-209ENST00000540819 A0A087WZG4 1122 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 FAM155AB1AL88 458 aaPredicted RBP6.59□□□□□ -1.35
PRKDC-209ENST00000540819 OPA1O60313 960 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 KPNA6O60684 536 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 EFCAB14O75071 495 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 ACRP10323 421 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 FGFR1P11362 822 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 NME1P15531 152 aaKnown RBP6.59□□□□□ -1.35
PRKDC-209ENST00000540819 ZEB1P37275 1124 aaPredicted RBP6.59□□□□□ -1.35
PRKDC-209ENST00000540819 CLCN7P51798 805 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 SLC9A5Q14940 896 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 ARHGAP29Q52LW3 1261 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 YOD1Q5VVQ6 348 aaPredicted RBP6.59□□□□□ -1.35
PRKDC-209ENST00000540819 EPM2AIP1Q7L775 607 aaPredicted RBP6.59□□□□□ -1.35
PRKDC-209ENST00000540819 SPACA3Q8IXA5 215 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 CPA6Q8N4T0 437 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 ZNF507Q8TCN5 953 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 AIFM3Q96NN9 605 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 PRDM5Q9NQX1 630 aaPredicted RBP6.59□□□□□ -1.35
PRKDC-209ENST00000540819 LMCD1Q9NZU5 365 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 GMIPQ9P107 970 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 POLG2Q9UHN1 485 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 PCDHB10Q9UN67 800 aa6.59□□□□□ -1.35
PRKDC-209ENST00000540819 ABHD14A-ACY1A0A1B0GW23 586 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 TNFRSF10CO14798 259 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 PMM2O15305 246 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 HTR3BO95264 441 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 SETSIPP0DME0 302 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 VDRP11473 427 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 VCAM1P19320 739 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 LPOP22079 712 aaPredicted RBP6.58□□□□□ -1.36
PRKDC-209ENST00000540819 CALRP27797 417 aaKnown RBP6.58□□□□□ -1.36
PRKDC-209ENST00000540819 IGFALSP35858 605 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 RECQLP46063 649 aaPredicted RBP6.58□□□□□ -1.36
PRKDC-209ENST00000540819 RAP1GAPP47736 663 aa6.58□□□□□ -1.36
PRKDC-209ENST00000540819 CCT5P48643 541 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms