RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 AEBP2Q6ZN18 517 aaPredicted RBP24.89■■□□□ 1.58
PRKDC-209ENST00000540819 CHIC1Q5VXU3 224 aa23.75■■□□□ 1.39
PRKDC-209ENST00000540819 SENP3Q9H4L4 574 aaPredicted RBP21.33■■□□□ 1.01
PRKDC-209ENST00000540819 PHF23Q9BUL5 403 aaPredicted RBP21.05■□□□□ 0.96
PRKDC-209ENST00000540819 FOXD1Q16676 465 aa19.81■□□□□ 0.76
PRKDC-209ENST00000540819 PLPPR3Q6T4P5 718 aa19.06■□□□□ 0.64
PRKDC-209ENST00000540819 MSH5O43196 834 aa18.59■□□□□ 0.57
PRKDC-209ENST00000540819 PIAS4Q8N2W9 510 aaPredicted RBP18.58■□□□□ 0.56
PRKDC-209ENST00000540819 PPP6R1Q9UPN7 881 aa18.55■□□□□ 0.56
PRKDC-209ENST00000540819 ADRA2BP18089 450 aa18.53■□□□□ 0.56
PRKDC-209ENST00000540819 POTEDQ86YR6 584 aa17.99■□□□□ 0.47
PRKDC-209ENST00000540819 SCAF1Q9H7N4 1312 aaKnown RBP17.08■□□□□ 0.32
PRKDC-209ENST00000540819 MAPK8IP2Q13387 824 aaPredicted RBP17■□□□□ 0.31
PRKDC-209ENST00000540819 DMRT2Q9Y5R5 561 aa16.88■□□□□ 0.29
PRKDC-209ENST00000540819 PPP4R3CPQ6ZMV5 832 aa16.7■□□□□ 0.26
PRKDC-209ENST00000540819 CNKSR2Q8WXI2 1034 aa16.38■□□□□ 0.21
PRKDC-209ENST00000540819 DCAF8L1A6NGE4 600 aa16.3■□□□□ 0.2
PRKDC-209ENST00000540819 HOXD11P31277 338 aaPredicted RBP16.28■□□□□ 0.2
PRKDC-209ENST00000540819 RNF216Q9NWF9 866 aaPredicted RBP16.21■□□□□ 0.19
PRKDC-209ENST00000540819 NCBP3Q53F19 620 aaKnown RBP16.15■□□□□ 0.18
PRKDC-209ENST00000540819 CACNB1Q02641 598 aaPredicted RBP15.96■□□□□ 0.15
PRKDC-209ENST00000540819 RNF39Q9H2S5 420 aa15.81■□□□□ 0.12
PRKDC-209ENST00000540819 NPM3O75607 178 aaKnown RBP15.8■□□□□ 0.12
PRKDC-209ENST00000540819 DNAJC5BQ9UF47 199 aa15.72■□□□□ 0.11
PRKDC-209ENST00000540819 C1QBPQ07021 282 aaKnown RBP15.65■□□□□ 0.1
PRKDC-209ENST00000540819 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.61■□□□□ 0.09
PRKDC-209ENST00000540819 KCNA4P22459 653 aa15.55■□□□□ 0.08
PRKDC-209ENST00000540819 U3KPZ7 1027 aaPredicted RBP15.18■□□□□ 0.02
PRKDC-209ENST00000540819 SLC4A2P04920 1241 aa15.05■□□□□ -0
PRKDC-209ENST00000540819 CAPN15O75808 1086 aa15.02■□□□□ -0
PRKDC-209ENST00000540819 SPINK5Q9NQ38 1064 aaPredicted RBP14.96□□□□□ -0.01
PRKDC-209ENST00000540819 APLP2Q06481 763 aa14.91□□□□□ -0.02
PRKDC-209ENST00000540819 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.89□□□□□ -0.03
PRKDC-209ENST00000540819 HNRNPUL2Q1KMD3 747 aaKnown RBP14.89□□□□□ -0.03
PRKDC-209ENST00000540819 DSG3P32926 999 aa14.83□□□□□ -0.04
PRKDC-209ENST00000540819 TRHP20396 242 aaPredicted RBP14.79□□□□□ -0.04
PRKDC-209ENST00000540819 SAMD1Q6SPF0 538 aaPredicted RBP14.78□□□□□ -0.04
PRKDC-209ENST00000540819 SLC4A1APQ9BWU0 796 aaKnown RBP14.75□□□□□ -0.05
PRKDC-209ENST00000540819 ZNF219Q9P2Y4 722 aaPredicted RBP14.74□□□□□ -0.05
PRKDC-209ENST00000540819 MYCNP04198 464 aaPredicted RBP14.66□□□□□ -0.06
PRKDC-209ENST00000540819 ABCB7O75027 752 aa14.63□□□□□ -0.07
PRKDC-209ENST00000540819 FOXD4L1Q9NU39 408 aa14.53□□□□□ -0.08
PRKDC-209ENST00000540819 POLA2Q14181 598 aa14.38□□□□□ -0.11
PRKDC-209ENST00000540819 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
PRKDC-209ENST00000540819 ZBTB22O15209 634 aa14.23□□□□□ -0.13
PRKDC-209ENST00000540819 ATF5Q9Y2D1 282 aaPredicted RBP14.23□□□□□ -0.13
PRKDC-209ENST00000540819 POTEHQ6S545 545 aa14.14□□□□□ -0.15
PRKDC-209ENST00000540819 ZBTB12Q9Y330 459 aaPredicted RBP14.12□□□□□ -0.15
PRKDC-209ENST00000540819 ATXN8OSP0DMR3 200 aa14.09□□□□□ -0.15
PRKDC-209ENST00000540819 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
PRKDC-209ENST00000540819 CHRDL2Q6WN34 429 aa13.86□□□□□ -0.19
PRKDC-209ENST00000540819 OSCARQ8IYS5 282 aa13.86□□□□□ -0.19
PRKDC-209ENST00000540819 FBLN2P98095 1184 aa13.82□□□□□ -0.2
PRKDC-209ENST00000540819 REM2Q8IYK8 340 aaPredicted RBP13.74□□□□□ -0.21
PRKDC-209ENST00000540819 CSRNP3Q8WYN3 585 aa13.68□□□□□ -0.22
PRKDC-209ENST00000540819 SPDYE2BA6NHP3 402 aa13.66□□□□□ -0.22
PRKDC-209ENST00000540819 SPDYE6P0CI01 402 aa13.66□□□□□ -0.22
PRKDC-209ENST00000540819 SPDYE2Q495Y8 402 aa13.66□□□□□ -0.22
PRKDC-209ENST00000540819 EHMT2Q96KQ7 1210 aa13.59□□□□□ -0.23
PRKDC-209ENST00000540819 MKRN4PQ13434 485 aaPredicted RBP13.58□□□□□ -0.24
PRKDC-209ENST00000540819 PITPNM1O00562 1244 aa13.56□□□□□ -0.24
PRKDC-209ENST00000540819 ZNF692Q9BU19 519 aaPredicted RBP13.54□□□□□ -0.24
PRKDC-209ENST00000540819 PIP4P2Q8N4L2 257 aa13.51□□□□□ -0.25
PRKDC-209ENST00000540819 SPDYE1Q8NFV5 336 aaPredicted RBP13.44□□□□□ -0.26
PRKDC-209ENST00000540819 CLEC11AQ9Y240 323 aa13.44□□□□□ -0.26
PRKDC-209ENST00000540819 FXR2P51116 673 aaKnown RBP eCLIP13.43□□□□□ -0.263e-9■■■■□ 25.3
PRKDC-209ENST00000540819 SSUH2Q9Y2M2 353 aa13.42□□□□□ -0.26
PRKDC-209ENST00000540819 HAX1O00165 279 aa13.34□□□□□ -0.27
PRKDC-209ENST00000540819 PABPN1Q86U42 306 aaKnown RBP eCLIP13.32□□□□□ -0.28
PRKDC-209ENST00000540819 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
PRKDC-209ENST00000540819 PRKAR2AP13861 404 aaKnown RBP13.26□□□□□ -0.29
PRKDC-209ENST00000540819 PRR29P0C7W0 189 aa13.22□□□□□ -0.29
PRKDC-209ENST00000540819 CHADLQ6NUI6 762 aa13.1□□□□□ -0.31
PRKDC-209ENST00000540819 SPDYE4A6NLX3 237 aa13.07□□□□□ -0.32
PRKDC-209ENST00000540819 EVX2Q03828 476 aa13.06□□□□□ -0.32
PRKDC-209ENST00000540819 STAG3Q9UJ98 1225 aa13.02□□□□□ -0.33
PRKDC-209ENST00000540819 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
PRKDC-209ENST00000540819 FARP1Q9Y4F1 1045 aaPredicted RBP12.94□□□□□ -0.34
PRKDC-209ENST00000540819 CD44P16070 742 aaKnown RBP12.84□□□□□ -0.35
PRKDC-209ENST00000540819 GABBR2O75899 941 aa12.83□□□□□ -0.36
PRKDC-209ENST00000540819 CREBZFQ9NS37 354 aa12.81□□□□□ -0.36
PRKDC-209ENST00000540819 CLCN6P51797 869 aa12.71□□□□□ -0.37
PRKDC-209ENST00000540819 NPM1P06748 294 aaKnown RBP eCLIP12.69□□□□□ -0.38
PRKDC-209ENST00000540819 ZRANB1Q9UGI0 708 aa12.69□□□□□ -0.38
PRKDC-209ENST00000540819 PAK3O75914 559 aaPredicted RBP12.67□□□□□ -0.38
PRKDC-209ENST00000540819 PROM2Q8N271 834 aa12.65□□□□□ -0.38
PRKDC-209ENST00000540819 ZNF579Q8NAF0 562 aaKnown RBP12.61□□□□□ -0.39
PRKDC-209ENST00000540819 DCBLD2Q96PD2 775 aa12.57□□□□□ -0.4
PRKDC-209ENST00000540819 PLEKHG5O94827 1062 aa12.56□□□□□ -0.4
PRKDC-209ENST00000540819 MNX1P50219 401 aaPredicted RBP12.55□□□□□ -0.4
PRKDC-209ENST00000540819 MIER1Q8N108 512 aa12.52□□□□□ -0.41
PRKDC-209ENST00000540819 POTEIP0CG38 1075 aa12.49□□□□□ -0.41
PRKDC-209ENST00000540819 LHX8Q68G74 356 aa12.49□□□□□ -0.41
PRKDC-209ENST00000540819 FKBP8Q14318 412 aa12.47□□□□□ -0.41
PRKDC-209ENST00000540819 PHF12Q96QT6 1004 aa12.47□□□□□ -0.41
PRKDC-209ENST00000540819 GALR2O43603 387 aaPredicted RBP12.45□□□□□ -0.42
PRKDC-209ENST00000540819 PLCD3Q8N3E9 789 aa12.43□□□□□ -0.42
PRKDC-209ENST00000540819 TSPYL2Q9H2G4 693 aaPredicted RBP12.43□□□□□ -0.42
PRKDC-209ENST00000540819 SLC24A1O60721 1099 aa12.36□□□□□ -0.43
PRKDC-209ENST00000540819 ZBTB47Q9UFB7 747 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms