RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 DDX41Q9UJV9 622 aaKnown RBP14.01□□□□□ -0.17
CBX3P4-202ENST00000540428 GTPBP6O43824 516 aaPredicted RBP14□□□□□ -0.17
CBX3P4-202ENST00000540428 DHX16O60231 1041 aaKnown RBP14□□□□□ -0.17
CBX3P4-202ENST00000540428 DGKDQ16760 1214 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 AAK1Q2M2I8 961 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 ARHGEF16Q5VV41 709 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 HERC6Q8IVU3 1022 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 SAMD3Q8N6K7 520 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 CTAGE1Q96RT6 745 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 UBAC1Q9BSL1 405 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 KATNAL1Q9BW62 490 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 AMNQ9BXJ7 453 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 GTF2IRD1Q9UHL9 959 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 MTCH2Q9Y6C9 303 aa14□□□□□ -0.17
CBX3P4-202ENST00000540428 MYO9BQ13459 2157 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 NR3C2P08235 984 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 SELPP16109 830 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 HSD17B4P51659 736 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 TAP1Q03518 808 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 LAMC2Q13753 1193 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 GDF6Q6KF10 455 aaPredicted RBP13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 PPTC7Q8NI37 304 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 PPP1R13LQ8WUF5 828 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 MTMR8Q96EF0 704 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 UHRF1Q96T88 793 aaPredicted RBP13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 PXMP2Q9NR77 195 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 MRVI1Q9Y6F6 885 aa13.99□□□□□ -0.17
CBX3P4-202ENST00000540428 GBF1Q92538 1859 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 F2P00734 622 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 IGHDP01880 384 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 CXCL10P02778 98 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 EIF2AK2P19525 551 aaKnown RBP13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 KCNJ6P48051 423 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 CHMP4BP1P59074 171 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 IFIT1BQ5T764 474 aaKnown RBP13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 KCNV1Q6PIU1 500 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 LRRC8DQ7L1W4 858 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 CHST3Q7LGC8 479 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 MICALL1Q8N3F8 863 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 VAT1LQ9HCJ6 419 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 LAMA4Q16363 1823 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 CHD7Q9P2D1 2997 aa13.98□□□□□ -0.17
CBX3P4-202ENST00000540428 TANC1Q9C0D5 1861 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 MUC3AQ02505 3323 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 HAS3O00219 553 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 OPLAHO14841 1288 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 ZBTB5O15062 677 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 TLL1O43897 1013 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 EFCAB14O75071 495 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 CFBP00751 764 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 HOXD8P13378 290 aaPredicted RBP13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 BMP1P13497 986 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 PSEN2P49810 448 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 WDR5P61964 334 aaKnown RBP13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 TRAF1Q13077 416 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 PTK7Q13308 1070 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 MFSD10Q14728 455 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 GPNMBQ14956 572 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 SEC23AQ15436 765 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 CNKSR3Q6P9H4 555 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 STOX1Q6ZVD7 989 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 DHX37Q8IY37 1157 aaKnown RBP13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 C7orf31Q8N865 590 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 DHX38Q92620 1227 aaKnown RBP13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 PDCD2LQ9BRP1 358 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 HDAC6Q9UBN7 1215 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 COG5Q9UP83 839 aa13.97□□□□□ -0.17
CBX3P4-202ENST00000540428 ABHD14A-ACY1A0A1B0GW23 586 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 EPOPA6NHQ4 379 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 KLRF2D3W0D1 207 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 RFXAPO00287 272 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 PPFIA4O75335 1185 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 TGFB3P10600 412 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 CKBP12277 381 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 SKIV2LQ15477 1246 aaKnown RBP13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 KIAA0753Q2KHM9 967 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 STAG2Q8N3U4 1231 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 ARNTL2Q8WYA1 636 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 CERS4Q9HA82 394 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 MAD2L2Q9UI95 211 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 SCN5AQ14524 2016 aa13.96□□□□□ -0.17
CBX3P4-202ENST00000540428 PALM3A6NDB9 673 aaPredicted RBP13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 NBNO60934 754 aa13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 ARHGEF15O94989 841 aa13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 TRIM71Q2Q1W2 868 aaKnown RBP13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 CELF3Q5SZQ8 465 aaKnown RBP13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 MYSM1Q5VVJ2 828 aa13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 VSIG10LQ86VR7 867 aa13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 ALG1Q9BT22 464 aa13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 LMCD1Q9NZU5 365 aa13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 PCDHA1Q9Y5I3 950 aa13.95□□□□□ -0.18
CBX3P4-202ENST00000540428 PPP1R11O60927 126 aaPredicted RBP13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 RGS20O76081 388 aa13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 GJB5O95377 273 aa13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 COL9A1P20849 921 aa13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 TFF2Q03403 129 aa13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 TRDNQ13061 729 aa13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 GRB10Q13322 594 aa13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 PGM5Q15124 567 aa13.94□□□□□ -0.18
CBX3P4-202ENST00000540428 RAD9AQ99638 391 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms