RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 PALM3A6NDB9 673 aaPredicted RBP16.16■□□□□ 0.18
SYNE1-235ENST00000537033 NR3C2P08235 984 aa16.16■□□□□ 0.18
SYNE1-235ENST00000537033 PTH1RQ03431 593 aa16.16■□□□□ 0.18
SYNE1-235ENST00000537033 PTGISQ16647 500 aa16.16■□□□□ 0.18
SYNE1-235ENST00000537033 DGKDQ16760 1214 aa16.16■□□□□ 0.18
SYNE1-235ENST00000537033 MTMR8Q96EF0 704 aa16.16■□□□□ 0.18
SYNE1-235ENST00000537033 KATNAL1Q9BW62 490 aa16.16■□□□□ 0.18
SYNE1-235ENST00000537033 NKX2-4Q9H2Z4 354 aa16.16■□□□□ 0.18
SYNE1-235ENST00000537033 E7EWF7 191 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 SGSM2O43147 1006 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 MYCLP12524 364 aaPredicted RBP16.15■□□□□ 0.18
SYNE1-235ENST00000537033 ATP2A2P16615 1042 aaKnown RBP16.15■□□□□ 0.18
SYNE1-235ENST00000537033 GHRHRQ02643 423 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 LAMC2Q13753 1193 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 TMEM67Q5HYA8 995 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 KCNV1Q6PIU1 500 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 CATIPQ7Z7H3 387 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 PPP1R13LQ8WUF5 828 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 EMID1Q96A84 441 aaPredicted RBP16.15■□□□□ 0.18
SYNE1-235ENST00000537033 PRDM12Q9H4Q4 367 aa16.15■□□□□ 0.18
SYNE1-235ENST00000537033 DDX41Q9UJV9 622 aaKnown RBP16.15■□□□□ 0.18
SYNE1-235ENST00000537033 CUL9Q8IWT3 2517 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 GCOM1H8Y6P7 765 aaPredicted RBP16.14■□□□□ 0.17
SYNE1-235ENST00000537033 OPLAHO14841 1288 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 PPP1R11O60927 126 aaPredicted RBP16.14■□□□□ 0.17
SYNE1-235ENST00000537033 POLR2MP0CAP2 368 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 HOXA13P31271 388 aaPredicted RBP16.14■□□□□ 0.17
SYNE1-235ENST00000537033 PPP2R2DQ66LE6 453 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 SESTD1Q86VW0 696 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 DHX37Q8IY37 1157 aaKnown RBP16.14■□□□□ 0.17
SYNE1-235ENST00000537033 C7orf31Q8N865 590 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 PPTC7Q8NI37 304 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 CAGE1Q8TC20 777 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 PIGSQ96S52 555 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 PDCD2LQ9BRP1 358 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 FTOQ9C0B1 505 aaKnown RBP eCLIP16.14■□□□□ 0.17
SYNE1-235ENST00000537033 RIOX1Q9H6W3 641 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 YBX2Q9Y2T7 364 aaKnown RBP16.14■□□□□ 0.17
SYNE1-235ENST00000537033 PCDHA11Q9Y5I1 949 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 A0A0C4DFX4 3053 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 EYSQ5T1H1 3165 aa16.14■□□□□ 0.17
SYNE1-235ENST00000537033 PNMA6FA0A0J9YX94 578 aa16.13■□□□□ 0.17
SYNE1-235ENST00000537033 IQCF3P0C7M6 154 aa16.13■□□□□ 0.17
SYNE1-235ENST00000537033 CCND2P30279 289 aa16.13■□□□□ 0.17
SYNE1-235ENST00000537033 RABGGTBP53611 331 aa16.13■□□□□ 0.17
SYNE1-235ENST00000537033 STOX1Q6ZVD7 989 aa16.13■□□□□ 0.17
SYNE1-235ENST00000537033 AFAP1L1Q8TED9 768 aa16.13■□□□□ 0.17
SYNE1-235ENST00000537033 SLC9A7Q96T83 725 aa16.13■□□□□ 0.17
SYNE1-235ENST00000537033 TRIP12Q14669 1992 aaPredicted RBP16.13■□□□□ 0.17
SYNE1-235ENST00000537033 IGFBP4P22692 258 aa16.12■□□□□ 0.17
SYNE1-235ENST00000537033 KIF5BP33176 963 aa16.12■□□□□ 0.17
SYNE1-235ENST00000537033 PSEN2P49810 448 aa16.12■□□□□ 0.17
SYNE1-235ENST00000537033 TROAPQ12815 778 aa16.12■□□□□ 0.17
SYNE1-235ENST00000537033 PGM5Q15124 567 aa16.12■□□□□ 0.17
SYNE1-235ENST00000537033 GDF6Q6KF10 455 aaPredicted RBP16.12■□□□□ 0.17
SYNE1-235ENST00000537033 CASC1Q6TDU7 716 aa16.12■□□□□ 0.17
SYNE1-235ENST00000537033 SYMPKQ92797 1274 aaKnown RBP16.12■□□□□ 0.17
SYNE1-235ENST00000537033 RBM8AQ9Y5S9 174 aaKnown RBP16.12■□□□□ 0.17
SYNE1-235ENST00000537033 BAZ2BQ9UIF8 2168 aaKnown RBP16.11■□□□□ 0.17
SYNE1-235ENST00000537033 BAIAP3O94812 1187 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 PARNO95453 639 aaKnown RBP16.11■□□□□ 0.17
SYNE1-235ENST00000537033 F2P00734 622 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 ZNF286BP0CG31 522 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 MFSD10Q14728 455 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 GNPTABQ3T906 1256 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 VSIG10LQ86VR7 867 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 FCHSD1Q86WN1 690 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 CTCFLQ8NI51 663 aaPredicted RBP16.11■□□□□ 0.17
SYNE1-235ENST00000537033 PPM1EQ8WY54 764 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 KAT2BQ92831 832 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 MAP4K1Q92918 833 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 VWCEQ96DN2 955 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 SPATA33Q96N06 139 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 ALG1Q9BT22 464 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 SENP2Q9HC62 589 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 SEC63Q9UGP8 760 aaKnown RBP16.11■□□□□ 0.17
SYNE1-235ENST00000537033 GTF2IRD1Q9UHL9 959 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 TAF6LQ9Y6J9 622 aa16.11■□□□□ 0.17
SYNE1-235ENST00000537033 KIF28PB7ZC32 967 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 DDAH1O94760 285 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 GGPS1O95749 300 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 TGFB3P10600 412 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 SELPP16109 830 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 KCNJ6P48051 423 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 KIAA0753Q2KHM9 967 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 CELF3Q5SZQ8 465 aaKnown RBP16.1■□□□□ 0.17
SYNE1-235ENST00000537033 LRRC8DQ7L1W4 858 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 MB21D2Q8IYB1 491 aaPredicted RBP16.1■□□□□ 0.17
SYNE1-235ENST00000537033 ZNF654Q8IZM8 581 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 USP38Q8NB14 1042 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 PHOSPHO2Q8TCD6 241 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 CUL5Q93034 780 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 RRP36Q96EU6 259 aaKnown RBP16.1■□□□□ 0.17
SYNE1-235ENST00000537033 MLXIPQ9HAP2 919 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 HDAC6Q9UBN7 1215 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 MYO9BQ13459 2157 aa16.1■□□□□ 0.17
SYNE1-235ENST00000537033 CYTH3O43739 400 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 PPFIA4O75335 1185 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 STAM2O75886 525 aa16.09■□□□□ 0.17
SYNE1-235ENST00000537033 MYOGP15173 224 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms