RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 TMEM240Q5SV17 173 aa27.13■■□□□ 1.93
SMPD1-209ENST00000533196 C16orf59Q7L2K0 433 aa27.13■■□□□ 1.93
SMPD1-209ENST00000533196 VSIG10LQ86VR7 867 aa27.13■■□□□ 1.93
SMPD1-209ENST00000533196 RRP36Q96EU6 259 aaKnown RBP27.13■■□□□ 1.93
SMPD1-209ENST00000533196 MRVI1Q9Y6F6 885 aa27.13■■□□□ 1.93
SMPD1-209ENST00000533196 CDC45O75419 566 aa27.12■■□□□ 1.93
SMPD1-209ENST00000533196 CASTP20810 708 aaKnown RBP27.12■■□□□ 1.93
SMPD1-209ENST00000533196 HOXA13P31271 388 aaPredicted RBP27.12■■□□□ 1.93
SMPD1-209ENST00000533196 PGM5Q15124 567 aa27.12■■□□□ 1.93
SMPD1-209ENST00000533196 RASIP1Q5U651 963 aa27.12■■□□□ 1.93
SMPD1-209ENST00000533196 AFG1LQ8WV93 481 aa27.12■■□□□ 1.93
SMPD1-209ENST00000533196 MMP3P08254 477 aa27.11■■□□□ 1.93
SMPD1-209ENST00000533196 LAMC2Q13753 1193 aa27.11■■□□□ 1.93
SMPD1-209ENST00000533196 SEC63Q9UGP8 760 aaKnown RBP27.11■■□□□ 1.93
SMPD1-209ENST00000533196 TGFB3P10600 412 aa27.1■■□□□ 1.93
SMPD1-209ENST00000533196 MYCLP12524 364 aaPredicted RBP27.1■■□□□ 1.93
SMPD1-209ENST00000533196 CCND2P30279 289 aa27.1■■□□□ 1.93
SMPD1-209ENST00000533196 DGKDQ16760 1214 aa27.1■■□□□ 1.93
SMPD1-209ENST00000533196 FAM47CQ5HY64 1035 aa27.1■■□□□ 1.93
SMPD1-209ENST00000533196 SGMS1Q86VZ5 419 aa27.1■■□□□ 1.93
SMPD1-209ENST00000533196 RPUSD2Q8IZ73 545 aaKnown RBP27.1■■□□□ 1.93
SMPD1-209ENST00000533196 MYL10Q9BUA6 226 aa27.1■■□□□ 1.93
SMPD1-209ENST00000533196 MTIF3Q9H2K0 278 aaKnown RBP27.1■■□□□ 1.93
SMPD1-209ENST00000533196 TRMT13Q9NUP7 481 aaKnown RBP27.1■■□□□ 1.93
SMPD1-209ENST00000533196 SLC12A7Q9Y666 1083 aa27.1■■□□□ 1.93
SMPD1-209ENST00000533196 LAMA2P24043 3122 aaKnown RBP27.1■■□□□ 1.93
SMPD1-209ENST00000533196 STAM2O75886 525 aa27.09■■□□□ 1.93
SMPD1-209ENST00000533196 TSGA10IPQ3SY00 556 aa27.09■■□□□ 1.93
SMPD1-209ENST00000533196 ZNF365Q70YC5 407 aa27.09■■□□□ 1.93
SMPD1-209ENST00000533196 SKAP1Q86WV1 359 aa27.09■■□□□ 1.93
SMPD1-209ENST00000533196 GUCD1Q96NT3 240 aa27.09■■□□□ 1.93
SMPD1-209ENST00000533196 SEMA6BQ9H3T3 888 aa27.09■■□□□ 1.93
SMPD1-209ENST00000533196 UMODL1Q5DID0 1318 aa27.09■■□□□ 1.93
SMPD1-209ENST00000533196 RGS20O76081 388 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 SESTD1Q86VW0 696 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 FCHSD1Q86WN1 690 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 DHX37Q8IY37 1157 aaKnown RBP27.08■■□□□ 1.93
SMPD1-209ENST00000533196 PPTC7Q8NI37 304 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 HERVK_113Q902F9 699 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 CCDC136Q96JN2 1154 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 NEK1Q96PY6 1258 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 WNT8AQ9H1J5 351 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 FRMPD4Q14CM0 1322 aa27.08■■□□□ 1.93
SMPD1-209ENST00000533196 FGBP02675 491 aa27.07■■□□□ 1.92
SMPD1-209ENST00000533196 PFKMP08237 780 aa27.07■■□□□ 1.92
SMPD1-209ENST00000533196 ACRP10323 421 aa27.07■■□□□ 1.92
SMPD1-209ENST00000533196 CCL23P55773 120 aa27.07■■□□□ 1.92
SMPD1-209ENST00000533196 KRT32Q14532 448 aa27.07■■□□□ 1.92
SMPD1-209ENST00000533196 CUL5Q93034 780 aa27.07■■□□□ 1.92
SMPD1-209ENST00000533196 KATNAL1Q9BW62 490 aa27.07■■□□□ 1.92
SMPD1-209ENST00000533196 PIK3CDO00329 1044 aa27.06■■□□□ 1.92
SMPD1-209ENST00000533196 PITPNM1O00562 1244 aa27.06■■□□□ 1.92
SMPD1-209ENST00000533196 GNPTABQ3T906 1256 aa27.06■■□□□ 1.92
SMPD1-209ENST00000533196 SYNE3Q6ZMZ3 975 aa27.06■■□□□ 1.92
SMPD1-209ENST00000533196 SRBD1Q8N5C6 995 aaKnown RBP27.06■■□□□ 1.92
SMPD1-209ENST00000533196 FANCBQ8NB91 859 aa27.06■■□□□ 1.92
SMPD1-209ENST00000533196 IL31RAQ8NI17 732 aa27.06■■□□□ 1.92
SMPD1-209ENST00000533196 PIBF1Q8WXW3 757 aa27.06■■□□□ 1.92
SMPD1-209ENST00000533196 PLEKHA8P1O95397 391 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 CYP2C9P11712 490 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 HOXD8P13378 290 aaPredicted RBP27.05■■□□□ 1.92
SMPD1-209ENST00000533196 RFC2P35250 354 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 BFSP2Q13515 415 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 CELF3Q5SZQ8 465 aaKnown RBP27.05■■□□□ 1.92
SMPD1-209ENST00000533196 MYSM1Q5VVJ2 828 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 KAT2BQ92831 832 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 FAM161BQ96MY7 647 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 NOD1Q9Y239 953 aa27.05■■□□□ 1.92
SMPD1-209ENST00000533196 PPFIA4O75335 1185 aa27.04■■□□□ 1.92
SMPD1-209ENST00000533196 COL9A3Q14050 684 aaPredicted RBP27.04■■□□□ 1.92
SMPD1-209ENST00000533196 XRRA1Q6P2D8 792 aa27.04■■□□□ 1.92
SMPD1-209ENST00000533196 DHX32Q7L7V1 743 aaKnown RBP27.04■■□□□ 1.92
SMPD1-209ENST00000533196 SMARCC2Q8TAQ2 1214 aa27.04■■□□□ 1.92
SMPD1-209ENST00000533196 TTYH1Q9H313 450 aaPredicted RBP27.04■■□□□ 1.92
SMPD1-209ENST00000533196 TRIP12Q14669 1992 aaPredicted RBP27.04■■□□□ 1.92
SMPD1-209ENST00000533196 HMGB1P09429 215 aaKnown RBP27.03■■□□□ 1.92
SMPD1-209ENST00000533196 DNAJB2P25686 324 aa27.03■■□□□ 1.92
SMPD1-209ENST00000533196 ICAM3P32942 547 aa27.03■■□□□ 1.92
SMPD1-209ENST00000533196 EXOSC10Q01780 885 aaKnown RBP27.03■■□□□ 1.92
SMPD1-209ENST00000533196 TMTC3Q6ZXV5 915 aa27.03■■□□□ 1.92
SMPD1-209ENST00000533196 CCDC155Q8N6L0 562 aa27.03■■□□□ 1.92
SMPD1-209ENST00000533196 RETREG2Q8NC44 543 aa27.03■■□□□ 1.92
SMPD1-209ENST00000533196 LRRC2Q9BYS8 371 aa27.03■■□□□ 1.92
SMPD1-209ENST00000533196 RBM28Q9NW13 759 aaKnown RBP27.03■■□□□ 1.92
SMPD1-209ENST00000533196 COL6A3P12111 3177 aa27.03■■□□□ 1.92
SMPD1-209ENST00000533196 TANC1Q9C0D5 1861 aa27.02■■□□□ 1.92
SMPD1-209ENST00000533196 GGPS1O95749 300 aa27.02■■□□□ 1.92
SMPD1-209ENST00000533196 F2P00734 622 aa27.02■■□□□ 1.92
SMPD1-209ENST00000533196 RXRAP19793 462 aa27.02■■□□□ 1.92
SMPD1-209ENST00000533196 UBA1P22314 1058 aaKnown RBP27.02■■□□□ 1.92
SMPD1-209ENST00000533196 SLC17A8Q8NDX2 589 aa27.02■■□□□ 1.92
SMPD1-209ENST00000533196 CAGE1Q8TC20 777 aa27.02■■□□□ 1.92
SMPD1-209ENST00000533196 SCLYQ96I15 445 aa27.02■■□□□ 1.92
SMPD1-209ENST00000533196 INPP4AQ96PE3 977 aaPredicted RBP27.02■■□□□ 1.92
SMPD1-209ENST00000533196 CDX2Q99626 313 aaPredicted RBP27.02■■□□□ 1.92
SMPD1-209ENST00000533196 MEIS2O14770 477 aa27.01■■□□□ 1.91
SMPD1-209ENST00000533196 PSEN2P49810 448 aa27.01■■□□□ 1.91
SMPD1-209ENST00000533196 MRPS9P82933 396 aaKnown RBP27.01■■□□□ 1.91
SMPD1-209ENST00000533196 PTGISQ16647 500 aa27.01■■□□□ 1.91
SMPD1-209ENST00000533196 MICU3Q86XE3 530 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms