RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 CHST3Q7LGC8 479 aa19.54■□□□□ 0.72
CPSF1-207ENST00000531727 HOMER1Q86YM7 354 aa19.54■□□□□ 0.72
CPSF1-207ENST00000531727 MAP4K1Q92918 833 aa19.54■□□□□ 0.72
CPSF1-207ENST00000531727 EMID1Q96A84 441 aaPredicted RBP19.54■□□□□ 0.72
CPSF1-207ENST00000531727 DDX41Q9UJV9 622 aaKnown RBP19.54■□□□□ 0.72
CPSF1-207ENST00000531727 CASTP20810 708 aaKnown RBP19.53■□□□□ 0.72
CPSF1-207ENST00000531727 RFC2P35250 354 aa19.53■□□□□ 0.72
CPSF1-207ENST00000531727 TROAPQ12815 778 aa19.53■□□□□ 0.72
CPSF1-207ENST00000531727 PIGSQ96S52 555 aa19.53■□□□□ 0.72
CPSF1-207ENST00000531727 PDCD2LQ9BRP1 358 aa19.53■□□□□ 0.72
CPSF1-207ENST00000531727 COL25A1Q9BXS0 654 aaPredicted RBP19.53■□□□□ 0.72
CPSF1-207ENST00000531727 MRVI1Q9Y6F6 885 aa19.53■□□□□ 0.72
CPSF1-207ENST00000531727 SLC4A7Q9Y6M7 1214 aa19.53■□□□□ 0.72
CPSF1-207ENST00000531727 ZBBXA8MT70 800 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 CYTH3O43739 400 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 HOXA13P31271 388 aaPredicted RBP19.52■□□□□ 0.72
CPSF1-207ENST00000531727 ANTXR2P58335 489 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 CHMP4BP1P59074 171 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 DGKDQ16760 1214 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 TMEM67Q5HYA8 995 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 DEFB128Q7Z7B8 93 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 SESTD1Q86VW0 696 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 RETREG2Q8NC44 543 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 KAT2BQ92831 832 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 NKX2-4Q9H2Z4 354 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 NOD1Q9Y239 953 aa19.52■□□□□ 0.72
CPSF1-207ENST00000531727 CHD9Q3L8U1 2897 aa19.52■□□□□ 0.71
CPSF1-207ENST00000531727 PRUNE2Q8WUY3 3088 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 IQCF3P0C7M6 154 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 MYCLP12524 364 aaPredicted RBP19.51■□□□□ 0.71
CPSF1-207ENST00000531727 BFSP2Q13515 415 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 LAMC2Q13753 1193 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 PGM5Q15124 567 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 PTGISQ16647 500 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 CATIPQ7Z7H3 387 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 MB21D2Q8IYB1 491 aaPredicted RBP19.51■□□□□ 0.71
CPSF1-207ENST00000531727 PPTC7Q8NI37 304 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 IGDCC4Q8TDY8 1250 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 GAS2L1Q99501 681 aaPredicted RBP19.51■□□□□ 0.71
CPSF1-207ENST00000531727 PRDM12Q9H4Q4 367 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 YBX2Q9Y2T7 364 aaKnown RBP19.51■□□□□ 0.71
CPSF1-207ENST00000531727 RBM8AQ9Y5S9 174 aaKnown RBP19.51■□□□□ 0.71
CPSF1-207ENST00000531727 MYH7BA7E2Y1 1941 aa19.51■□□□□ 0.71
CPSF1-207ENST00000531727 PNMA6FA0A0J9YX94 578 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 GCOM1H8Y6P7 765 aaPredicted RBP19.5■□□□□ 0.71
CPSF1-207ENST00000531727 RGS20O76081 388 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 POLR2MP0CAP2 368 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 ACTN1P12814 892 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 ATP2A2P16615 1042 aaKnown RBP19.5■□□□□ 0.71
CPSF1-207ENST00000531727 RABGGTBP53611 331 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 GDF6Q6KF10 455 aaPredicted RBP19.5■□□□□ 0.71
CPSF1-207ENST00000531727 KCNV1Q6PIU1 500 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 VSIG10LQ86VR7 867 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 DHX37Q8IY37 1157 aaKnown RBP19.5■□□□□ 0.71
CPSF1-207ENST00000531727 CCDC155Q8N6L0 562 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 CTAGE1Q96RT6 745 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 SLC28A3Q9HAS3 691 aa19.5■□□□□ 0.71
CPSF1-207ENST00000531727 CCND2P30279 289 aa19.49■□□□□ 0.71
CPSF1-207ENST00000531727 USP38Q8NB14 1042 aa19.49■□□□□ 0.71
CPSF1-207ENST00000531727 IL31RAQ8NI17 732 aa19.49■□□□□ 0.71
CPSF1-207ENST00000531727 CAGE1Q8TC20 777 aa19.49■□□□□ 0.71
CPSF1-207ENST00000531727 MAP3K14Q99558 947 aa19.49■□□□□ 0.71
CPSF1-207ENST00000531727 KATNAL1Q9BW62 490 aa19.49■□□□□ 0.71
CPSF1-207ENST00000531727 PCDHA11Q9Y5I1 949 aa19.49■□□□□ 0.71
CPSF1-207ENST00000531727 F2P00734 622 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 PSEN2P49810 448 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 MYSM1Q5VVJ2 828 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 FCHSD1Q86WN1 690 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 AFAP1L1Q8TED9 768 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 LY9Q9HBG7 655 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 HDAC6Q9UBN7 1215 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 GTF2IRD1Q9UHL9 959 aa19.48■□□□□ 0.71
CPSF1-207ENST00000531727 HAS3O00219 553 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 DDAH1O94760 285 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 ZNF286BP0CG31 522 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 TGFB3P10600 412 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 HOXD8P13378 290 aaPredicted RBP19.47■□□□□ 0.71
CPSF1-207ENST00000531727 MYOGP15173 224 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 MFSD10Q14728 455 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 CELF3Q5SZQ8 465 aaKnown RBP19.47■□□□□ 0.71
CPSF1-207ENST00000531727 PPP2R2DQ66LE6 453 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 ZNF654Q8IZM8 581 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 C7orf31Q8N865 590 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 ALG1Q9BT22 464 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 MTA3Q9BTC8 594 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 SPZ1Q9BXG8 430 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 FTOQ9C0B1 505 aaKnown RBP eCLIP19.47■□□□□ 0.71
CPSF1-207ENST00000531727 BAZ2BQ9UIF8 2168 aaKnown RBP19.47■□□□□ 0.71
CPSF1-207ENST00000531727 FRMPD4Q14CM0 1322 aa19.47■□□□□ 0.71
CPSF1-207ENST00000531727 PPFIA4O75335 1185 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 GGPS1O95749 300 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 UBA1P22314 1058 aaKnown RBP19.46■□□□□ 0.71
CPSF1-207ENST00000531727 KIF5BP33176 963 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 SP2Q02086 613 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 RBL2Q08999 1139 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 ADGRE1Q14246 886 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 KIAA0753Q2KHM9 967 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 HSDL1Q3SXM5 330 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 CASC1Q6TDU7 716 aa19.46■□□□□ 0.71
CPSF1-207ENST00000531727 CTCFLQ8NI51 663 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms