RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 REXO1Q8N1G1 1221 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 FAM133AQ8N9E0 248 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 SNX21Q969T3 373 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 CDHR1Q96JP9 859 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 FGD4Q96M96 766 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 IWS1Q96ST2 819 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 KIF2CQ99661 725 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 LARP6Q9BRS8 491 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 NCOA5Q9HCD5 579 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 FAM217BQ9NTX9 383 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 LRRC37A2A6NM11 1700 aa8.88□□□□□ -0.99
LIMCH1-222ENST00000515847 ASTN1O14525 1302 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 hCG_1642624A0A1W2PR95 340 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 C2orf72A6NCS6 295 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 CCND2P30279 289 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 ANP32AP39687 249 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 HSD17B4P51659 736 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 PDE4DQ08499 809 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 GNL2Q13823 731 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 BAATQ14032 418 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 MAP3K21Q5TCX8 1036 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 WWC2Q6AWC2 1192 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 KCNV1Q6PIU1 500 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 NSUN7Q8NE18 718 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 TRPV1Q8NER1 839 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 PHKBQ93100 1093 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 INTS4Q96HW7 963 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 TMX3Q96JJ7 454 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 PURBQ96QR8 312 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 RMDN3Q96TC7 470 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 RNF208Q9H0X6 261 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 ABHD16BQ9H3Z7 469 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 SPC25Q9HBM1 224 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 VTA1Q9NP79 307 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 RIC8AQ9NPQ8 531 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 DAXXQ9UER7 740 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 TCEAL9Q9UHQ7 104 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 SMC3Q9UQE7 1217 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 FRMPD3Q5JV73 1810 aa8.87□□□□□ -0.99
LIMCH1-222ENST00000515847 RPTORQ8N122 1335 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 SOWAHBA6NEL2 793 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 SMCO2A6NFE2 343 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 STXBP3O00186 592 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 OPLAHO14841 1288 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 CYBAP13498 195 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 CCND3P30281 292 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 ALDH5A1P51649 535 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 SETQ01105 290 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 FUT2Q10981 343 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 NTRK3Q16288 839 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 BRDTQ58F21 947 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 MAMDC4Q6UXC1 1216 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 DAGLBQ8NCG7 672 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 SYTL5Q8TDW5 730 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 TBC1D5Q92609 795 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 GPKOWQ92917 476 aaPredicted RBP eCLIP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 TINF2Q9BSI4 451 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 ALG1Q9BT22 464 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 ZMYND12Q9H0C1 365 aa8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 HMX1Q9NP08 348 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 PAK6Q9NQU5 681 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 DDX49Q9Y6V7 483 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-222ENST00000515847 CCDC194A0A1B0GVG4 234 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 H3BQV1 296 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 NKRFO15226 690 aaKnown RBP eCLIP8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 PPFIA3O75145 1194 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 AKR1A1P14550 325 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 KRT2P35908 639 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 STXBP2Q15833 593 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 PRAMEF19Q5SWL8 479 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 IFFO2Q5TF58 517 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 ARMCX2Q7L311 632 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 KRT25Q7Z3Z0 450 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 NLRX1Q86UT6 975 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 NECAB1Q8N987 351 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 SHISA4Q96DD7 197 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 C8orf76Q96K31 380 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 DEFB118Q96PH6 123 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 PXMP2Q9NR77 195 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 COL20A1Q9P218 1284 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 ZHX1Q9UKY1 873 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 PCDHA4Q9UN74 947 aa8.85□□□□□ -0.99
LIMCH1-222ENST00000515847 FRMPD4Q14CM0 1322 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 ZEB2O60315 1214 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 EIF3JO75822 258 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 LARGE1O95461 756 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 SNAI1O95863 264 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 GJB1P08034 283 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 ZNF865P0CJ78 1059 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 RARBP10826 455 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 GCFC2P16383 781 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 EN2P19622 333 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 CNGA1P29973 690 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 HOXA13P31271 388 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 TTLL4Q14679 1199 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 FCHSD1Q86WN1 690 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 FBXO16Q8IX29 292 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 BLIDQ8IZY5 108 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms