RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 HOXA13P31271 388 aaPredicted RBP20.25■□□□□ 0.83
DDX41-217ENST00000515562 CCL23P55773 120 aa20.25■□□□□ 0.83
DDX41-217ENST00000515562 KCNV1Q6PIU1 500 aa20.25■□□□□ 0.83
DDX41-217ENST00000515562 RPUSD2Q8IZ73 545 aaKnown RBP20.25■□□□□ 0.83
DDX41-217ENST00000515562 ZNF654Q8IZM8 581 aa20.25■□□□□ 0.83
DDX41-217ENST00000515562 TMTC2Q8N394 836 aa20.25■□□□□ 0.83
DDX41-217ENST00000515562 TMEM87BQ96K49 555 aa20.25■□□□□ 0.83
DDX41-217ENST00000515562 SPZ1Q9BXG8 430 aa20.25■□□□□ 0.83
DDX41-217ENST00000515562 ANO2Q9NQ90 1003 aa20.25■□□□□ 0.83
DDX41-217ENST00000515562 DDX41Q9UJV9 622 aaKnown RBP20.25■□□□□ 0.83
DDX41-217ENST00000515562 FGBP02675 491 aa20.24■□□□□ 0.83
DDX41-217ENST00000515562 PFKMP08237 780 aa20.24■□□□□ 0.83
DDX41-217ENST00000515562 CYP2C9P11712 490 aa20.24■□□□□ 0.83
DDX41-217ENST00000515562 PGM5Q15124 567 aa20.24■□□□□ 0.83
DDX41-217ENST00000515562 DGKDQ16760 1214 aa20.24■□□□□ 0.83
DDX41-217ENST00000515562 TIFAQ96CG3 184 aa20.24■□□□□ 0.83
DDX41-217ENST00000515562 TANC1Q9C0D5 1861 aa20.24■□□□□ 0.83
DDX41-217ENST00000515562 PITPNM1O00562 1244 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 SLC27A2O14975 620 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 MYCLP12524 364 aaPredicted RBP20.23■□□□□ 0.83
DDX41-217ENST00000515562 CASTP20810 708 aaKnown RBP20.23■□□□□ 0.83
DDX41-217ENST00000515562 SMARCA1P28370 1054 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 CCND2P30279 289 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 LAMC2Q13753 1193 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 NFXL1Q6ZNB6 911 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 PPTC7Q8NI37 304 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 LZTS2Q9BRK4 669 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 KATNAL1Q9BW62 490 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 NOD1Q9Y239 953 aa20.23■□□□□ 0.83
DDX41-217ENST00000515562 BAZ2BQ9UIF8 2168 aaKnown RBP20.22■□□□□ 0.83
DDX41-217ENST00000515562 CCDC69A6NI79 296 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 SH2B2O14492 632 aaPredicted RBP20.22■□□□□ 0.83
DDX41-217ENST00000515562 CALM1P0DP23 149 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 CALM2P0DP24 149 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 CALM3P0DP25 149 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 GNAQP50148 359 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 CREB3L3Q68CJ9 461 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 VSIG10LQ86VR7 867 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 SESTD1Q86VW0 696 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 RRP36Q96EU6 259 aaKnown RBP20.22■□□□□ 0.83
DDX41-217ENST00000515562 SCLYQ96I15 445 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 MYL10Q9BUA6 226 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 SEC63Q9UGP8 760 aaKnown RBP20.22■□□□□ 0.83
DDX41-217ENST00000515562 CDH23Q9H251 3354 aa20.22■□□□□ 0.83
DDX41-217ENST00000515562 FOSL2P15408 326 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 RFC2P35250 354 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 LIFRP42702 1097 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 CHMP4BP1P59074 171 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 BFSP2Q13515 415 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 NECTIN1Q15223 517 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 RAB30Q15771 203 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 RNF20Q5VTR2 975 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 OTOP2Q7RTS6 562 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 FCHSD1Q86WN1 690 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 DHX37Q8IY37 1157 aaKnown RBP20.21■□□□□ 0.83
DDX41-217ENST00000515562 CCDC155Q8N6L0 562 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 IL31RAQ8NI17 732 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 PBX4Q9BYU1 374 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 FRMPD4Q14CM0 1322 aa20.21■□□□□ 0.83
DDX41-217ENST00000515562 STAM2O75886 525 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 RGS20O76081 388 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 TGFB3P10600 412 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 RETREG2Q8NC44 543 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 PIBF1Q8WXW3 757 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 MYLIPQ8WY64 445 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 KAT2BQ92831 832 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 ZNF576Q9H609 170 aa20.2■□□□□ 0.82
DDX41-217ENST00000515562 CXXC1Q9P0U4 656 aaPredicted RBP20.2■□□□□ 0.82
DDX41-217ENST00000515562 F2P00734 622 aa20.19■□□□□ 0.82
DDX41-217ENST00000515562 HOXD8P13378 290 aaPredicted RBP20.19■□□□□ 0.82
DDX41-217ENST00000515562 PTGISQ16647 500 aa20.19■□□□□ 0.82
DDX41-217ENST00000515562 GNPTABQ3T906 1256 aa20.19■□□□□ 0.82
DDX41-217ENST00000515562 MAFAQ8NHW3 353 aaPredicted RBP20.19■□□□□ 0.82
DDX41-217ENST00000515562 CAGE1Q8TC20 777 aa20.19■□□□□ 0.82
DDX41-217ENST00000515562 PPP1R13LQ8WUF5 828 aa20.19■□□□□ 0.82
DDX41-217ENST00000515562 MSRAQ9UJ68 235 aa20.19■□□□□ 0.82
DDX41-217ENST00000515562 SLC12A7Q9Y666 1083 aa20.19■□□□□ 0.82
DDX41-217ENST00000515562 GRXCR1A8MXD5 290 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 GGPS1O95749 300 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 ACTN1P12814 892 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 UBA1P22314 1058 aaKnown RBP20.18■□□□□ 0.82
DDX41-217ENST00000515562 PBX2P40425 430 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 CELF3Q5SZQ8 465 aaKnown RBP20.18■□□□□ 0.82
DDX41-217ENST00000515562 MYSM1Q5VVJ2 828 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 C7orf31Q8N865 590 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 CUL5Q93034 780 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 SPATA33Q96N06 139 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 GTF2IRD1Q9UHL9 959 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 SLC4A7Q9Y6M7 1214 aa20.18■□□□□ 0.82
DDX41-217ENST00000515562 MYH7BA7E2Y1 1941 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 ZBBXA8MT70 800 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 PIK3CDO00329 1044 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 PLEKHA8P1O95397 391 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 IQCF3P0C7M6 154 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 ZNF286BP0CG31 522 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 PSEN2P49810 448 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 MFSD10Q14728 455 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 GRIN2CQ14957 1233 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 GDF6Q6KF10 455 aaPredicted RBP20.17■□□□□ 0.82
DDX41-217ENST00000515562 DEFB128Q7Z7B8 93 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms