RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 PRDM6Q9NQX0 595 aa13.01□□□□□ -0.33
LIMCH1-214ENST00000512228 POLR3EQ9NVU0 708 aa13.01□□□□□ -0.33
LIMCH1-214ENST00000512228 RBM8AQ9Y5S9 174 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-214ENST00000512228 U3KPZ7 1027 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-214ENST00000512228 RAD50Q92878 1312 aa13.01□□□□□ -0.33
LIMCH1-214ENST00000512228 EYSQ5T1H1 3165 aa13.01□□□□□ -0.33
LIMCH1-214ENST00000512228 PTPRSQ13332 1948 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 NKRFO15226 690 aaKnown RBP eCLIP13□□□□□ -0.33
LIMCH1-214ENST00000512228 MYCLP12524 364 aaPredicted RBP13□□□□□ -0.33
LIMCH1-214ENST00000512228 ZNF200P98182 395 aaPredicted RBP13□□□□□ -0.33
LIMCH1-214ENST00000512228 STXBP2Q15833 593 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 FAM47CQ5HY64 1035 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 ARHGEF16Q5VV41 709 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 GDF6Q6KF10 455 aaPredicted RBP13□□□□□ -0.33
LIMCH1-214ENST00000512228 MCF2L2Q86YR7 1114 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 CMTR1Q8N1G2 835 aaKnown RBP13□□□□□ -0.33
LIMCH1-214ENST00000512228 DHX38Q92620 1227 aaKnown RBP13□□□□□ -0.33
LIMCH1-214ENST00000512228 IWS1Q96ST2 819 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 PDCD2LQ9BRP1 358 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 NKX2-4Q9H2Z4 354 aa13□□□□□ -0.33
LIMCH1-214ENST00000512228 EIF3JO75822 258 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 ARHGEF15O94989 841 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 IQCF3P0C7M6 154 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 FOSL2P15408 326 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 PGM5Q15124 567 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 TMEM67Q5HYA8 995 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 NFRKBQ6P4R8 1299 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 PSRC1Q6PGN9 363 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 VSIG10LQ86VR7 867 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 FCHSD1Q86WN1 690 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 NCOA7Q8NI08 942 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 RUFY2Q8WXA3 655 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 WNT8BQ93098 351 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 PRDM12Q9H4Q4 367 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 LY9Q9HBG7 655 aa12.99□□□□□ -0.33
LIMCH1-214ENST00000512228 KPNA6O60684 536 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 GH1P01241 217 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 RXRAP19793 462 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 MRPS9P82933 396 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 TRDNQ13061 729 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 WTAPQ15007 396 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 NECTIN1Q15223 517 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 PTGISQ16647 500 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 HSDL1Q3SXM5 330 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 MYSM1Q5VVJ2 828 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 TMCO2Q7Z6W1 182 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 RAB11FIP4Q86YS3 637 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 SEZ6LQ9BYH1 1024 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 HDAC6Q9UBN7 1215 aa12.98□□□□□ -0.33
LIMCH1-214ENST00000512228 TMEM265A0A087WTH1 108 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 PNMA6FA0A0J9YX94 578 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 HAS3O00219 553 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 RFXAPO00287 272 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 SLC27A2O14975 620 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 SUPT20HL2P0C7V6 817 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 ZNF286BP0CG31 522 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 SEMA3FQ13275 785 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 TRAF7Q6Q0C0 670 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 SPRED2Q7Z698 418 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 SRBD1Q8N5C6 995 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 MPHOSPH6Q99547 160 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 ESYT1Q9BSJ8 1104 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 ALG1Q9BT22 464 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 LRRC2Q9BYS8 371 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 OSBPL7Q9BZF2 842 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 MAF1Q9H063 256 aa12.97□□□□□ -0.33
LIMCH1-214ENST00000512228 hCG_1642624A0A1W2PR95 340 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 B4DLN1 442 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 PLEKHA8P1O95397 391 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 MRPL12P52815 198 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 CELF3Q5SZQ8 465 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 USP17L6PQ6QN14 398 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 SESTD1Q86VW0 696 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 RPUSD2Q8IZ73 545 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 PPM1EQ8WY54 764 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 EMID1Q96A84 441 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 C16orf70Q9BSU1 422 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 RTEL1Q9NZ71 1219 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 MRVI1Q9Y6F6 885 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 SLC4A7Q9Y6M7 1214 aa12.96□□□□□ -0.33
LIMCH1-214ENST00000512228 TANC1Q9C0D5 1861 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 UNC80Q8N2C7 3258 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 EPOPA6NHQ4 379 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 GCOM1H8Y6P7 765 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 PRC1O43663 620 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 NBNO60934 754 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 POLR2MP0CAP2 368 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 HOXD8P13378 290 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 CASTP20810 708 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 PSEN2P49810 448 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 PTPN11Q06124 597 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 LAMC2Q13753 1193 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 MBTPS1Q14703 1052 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 DGKDQ16760 1214 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 TRIM71Q2Q1W2 868 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 BRDTQ58F21 947 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 CREB3L3Q68CJ9 461 aa12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 RALYLQ86SE5 291 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 DHX37Q8IY37 1157 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-214ENST00000512228 ZNF654Q8IZM8 581 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms