RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 AP5M1Q9H0R1 490 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 SPC25Q9HBM1 224 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 RTEL1Q9NZ71 1219 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 KCNJ14Q9UNX9 436 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 LRRC37A2A6NM11 1700 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 ESYT2A0FGR8 921 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 KBTBD13C9JR72 458 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 FOSP01100 380 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 C6orf222P0C671 652 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 ST3GAL1Q11201 340 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 TTLL4Q14679 1199 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 GJC2Q5T442 439 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 TAPT1Q6NXT6 567 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 ARRDC4Q8NCT1 418 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 RASGRP4Q8TDF6 673 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 SHISA4Q96DD7 197 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 TMX3Q96JJ7 454 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 LLPHQ9BRT6 129 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 CRISPLD2Q9H0B8 497 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 MRVI1Q9Y6F6 885 aa13.07□□□□□ -0.32
LIMCH1-210ENST00000509454 DYNC1LI2O43237 492 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 DUSP11O75319 330 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 TXNP10599 105 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 SMPD1P17405 629 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 ZNF76P36508 570 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 AP3B2Q13367 1082 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 GNPTABQ3T906 1256 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 RNF180Q86T96 592 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 TLK2Q86UE8 772 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 VSIG10LQ86VR7 867 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 OGDHLQ9ULD0 1010 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 PCDHA4Q9UN74 947 aa13.06□□□□□ -0.32
LIMCH1-210ENST00000509454 ADCY6O43306 1168 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 SORBS3O60504 671 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 FDPSP14324 419 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 PTGS1P23219 599 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 HMGN5P82970 282 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 PCNX4Q63HM2 1172 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 MCTP2Q6DN12 878 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 NLRX1Q86UT6 975 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 BLIDQ8IZY5 108 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 OR6J1Q8NGC5 347 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 DIS3LQ8TF46 1054 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 BRMS1Q9HCU9 246 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 GJB4Q9NTQ9 266 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 SYNRGQ9UMZ2 1314 aa13.05□□□□□ -0.32
LIMCH1-210ENST00000509454 FRMPD3Q5JV73 1810 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 ADAMTS3O15072 1205 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 STAM2O75886 525 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 CAPN2P17655 700 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 LRRC41Q15345 812 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 LY6KQ17RY6 165 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 DUSP28Q4G0W2 176 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 TMEM63BQ5T3F8 832 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 IFFO2Q5TF58 517 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 GALNT17Q6IS24 598 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 XRRA1Q6P2D8 792 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 TEX2Q8IWB9 1127 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 ANKLE1Q8NAG6 615 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 COPS5Q92905 334 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 PAWRQ96IZ0 340 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 C8orf76Q96K31 380 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 FRMPD4Q14CM0 1322 aa13.04□□□□□ -0.32
LIMCH1-210ENST00000509454 CCDC194A0A1B0GVG4 234 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 RBM47A0AV96 593 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 NKRFO15226 690 aaKnown RBP eCLIP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 ZEB2O60315 1214 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 ARIH2O95376 493 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 CLK2P49760 499 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 MRPS9P82933 396 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 BEX3Q00994 111 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 GUCY1B3Q02153 619 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 BRDTQ58F21 947 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 GNASQ5JWF2 1037 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 NECAB2Q7Z6G3 386 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 HSCBQ8IWL3 235 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 FAM177A1Q8N128 213 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 FERMT2Q96AC1 680 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 VTI1AQ96AJ9 217 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 PHF20Q9BVI0 1012 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 C11orf49Q9H6J7 331 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 PKD2L1Q9P0L9 805 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 SMC3Q9UQE7 1217 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 KIF3AQ9Y496 699 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 KIAA1217Q5T5P2 1943 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 MYADML2A6NDP7 307 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 DNM1LO00429 736 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 GH1P01241 217 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 KRT2P35908 639 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 ARHGAP4P98171 946 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 GNL2Q13823 731 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 SAFBQ15424 915 aaKnown RBP eCLIP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 FSCN1Q16658 493 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 KRT40Q6A162 431 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 KCNV1Q6PIU1 500 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 DAGLBQ8NCG7 672 aa13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 SENP6Q9GZR1 1112 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 GNEQ9Y223 722 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-210ENST00000509454 CENPFP49454 3210 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms