RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 LAMC2Q13753 1193 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 DGKDQ16760 1214 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 AAK1Q2M2I8 961 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 QRICH1Q2TAL8 776 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 FAM47CQ5HY64 1035 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 PPP2R2DQ66LE6 453 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 MTMR8Q96EF0 704 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 TAAR1Q96RJ0 339 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 ARID3AQ99856 593 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 ZKSCAN3Q9BRR0 538 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 KATNAL1Q9BW62 490 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 JMJD4Q9H9V9 463 aa10.64□□□□□ -0.71
HDAC3-212ENST00000492407 B4E1Z4 1266 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 EFCAB14O75071 495 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 PPFIA4O75335 1185 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 ARIH2O95376 493 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 IGHDP01880 384 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 NR3C2P08235 984 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 MMP3P08254 477 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 TGFB3P10600 412 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 HOXD8P13378 290 aaPredicted RBP10.63□□□□□ -0.71
HDAC3-212ENST00000492407 IGFBP4P22692 258 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 PTGISQ16647 500 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 IFIT1BQ5T764 474 aaKnown RBP10.63□□□□□ -0.71
HDAC3-212ENST00000492407 ARHGEF16Q5VV41 709 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 B4GALNT3Q6L9W6 998 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 STOX1Q6ZVD7 989 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 PPTC7Q8NI37 304 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 AFG1LQ8WV93 481 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 COPS5Q92905 334 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 DDX41Q9UJV9 622 aaKnown RBP10.63□□□□□ -0.71
HDAC3-212ENST00000492407 PRUNE2Q8WUY3 3088 aa10.63□□□□□ -0.71
HDAC3-212ENST00000492407 VCANP13611 3396 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 PALM3A6NDB9 673 aaPredicted RBP10.62□□□□□ -0.71
HDAC3-212ENST00000492407 KLRF2D3W0D1 207 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 ZBTB5O15062 677 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 CXCL10P02778 98 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 SELPP16109 830 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 RABGGTBP53611 331 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 TRDNQ13061 729 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 PTK7Q13308 1070 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 SEC23AQ15436 765 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 LY6KQ17RY6 165 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 DEFB128Q7Z7B8 93 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 HERC6Q8IVU3 1022 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 C7orf31Q8N865 590 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 TBC1D5Q92609 795 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 KAT2BQ92831 832 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 FTOQ9C0B1 505 aaKnown RBP eCLIP10.62□□□□□ -0.71
HDAC3-212ENST00000492407 PXMP2Q9NR77 195 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 LMCD1Q9NZU5 365 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 GTF2IRD1Q9UHL9 959 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 LCTP09848 1927 aa10.62□□□□□ -0.71
HDAC3-212ENST00000492407 SCN10AQ9Y5Y9 1956 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 ABHD14A-ACY1A0A1B0GW23 586 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 HAS3O00219 553 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 GTPBP6O43824 516 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-212ENST00000492407 DHX16O60231 1041 aaKnown RBP10.61□□□□□ -0.71
HDAC3-212ENST00000492407 STAM2O75886 525 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 F2P00734 622 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 KCNJ6P48051 423 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 SEPT14Q6ZU15 432 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 VSIG10LQ86VR7 867 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 IL27Q8NEV9 243 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 RUFY2Q8WXA3 655 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 CTAGE1Q96RT6 745 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 CPVLQ9H3G5 476 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 COL20A1Q9P218 1284 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 COG5Q9UP83 839 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 PCDHA1Q9Y5I3 950 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 MRVI1Q9Y6F6 885 aa10.61□□□□□ -0.71
HDAC3-212ENST00000492407 U3KPZ7 1027 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-212ENST00000492407 CFBP00751 764 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 CA3P07451 260 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 MYOGP15173 224 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 EIF2AK2P19525 551 aaKnown RBP10.6□□□□□ -0.71
HDAC3-212ENST00000492407 PSEN2P49810 448 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 CELF3Q5SZQ8 465 aaKnown RBP10.6□□□□□ -0.71
HDAC3-212ENST00000492407 MYSM1Q5VVJ2 828 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 GDF6Q6KF10 455 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-212ENST00000492407 CNKSR3Q6P9H4 555 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 LRRC8DQ7L1W4 858 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 PPM1EQ8WY54 764 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 MAP3K14Q99558 947 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 PDCD2LQ9BRP1 358 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 MTA3Q9BTC8 594 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 RIOX1Q9H6W3 641 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 VAT1LQ9HCJ6 419 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 MAD2L2Q9UI95 211 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 MTCH2Q9Y6C9 303 aa10.6□□□□□ -0.71
HDAC3-212ENST00000492407 EMSYQ7Z589 1322 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 TTC28Q96AY4 2481 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 PNMA6FA0A0J9YX94 578 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 ERICH2A1L162 156 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 GCOM1H8Y6P7 765 aaPredicted RBP10.59□□□□□ -0.71
HDAC3-212ENST00000492407 OPLAHO14841 1288 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 CAND2O75155 1236 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 POLR2MP0CAP2 368 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 CKBP12277 381 aa10.59□□□□□ -0.71
HDAC3-212ENST00000492407 SMARCA1P28370 1054 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms