RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PRR5P85299 388 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 ZNF200P98182 395 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-208ENST00000490788 LSAMPQ13449 338 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 RASGRF1Q13972 1273 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 CBX2Q14781 532 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-208ENST00000490788 SF1Q15637 639 aaKnown RBP3.27□□□□□ -1.89
HMGB1-208ENST00000490788 ACBD5Q5T8D3 534 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-208ENST00000490788 TTLL10Q6ZVT0 673 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 CEP68Q76N32 757 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 TMEM151BQ8IW70 566 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 TEX2Q8IWB9 1127 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 NLGN1Q8N2Q7 840 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 NPLOC4Q8TAT6 608 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 ALG3Q92685 438 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 SIGLEC10Q96LC7 697 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 DRC1Q96MC2 740 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 DEPDC7Q96QD5 511 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 DNAJC2Q99543 621 aaKnown RBP3.27□□□□□ -1.89
HMGB1-208ENST00000490788 YIPF4Q9BSR8 244 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 SPATA9Q9BWV2 254 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 MBD1Q9UIS9 605 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-208ENST00000490788 NCAPD3P42695 1498 aa3.27□□□□□ -1.89
HMGB1-208ENST00000490788 KDM2BQ8NHM5 1336 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 BUB1BO60566 1050 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-208ENST00000490788 MAFKO60675 156 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 DGKIO75912 1065 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 GLI4P10075 376 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 FGFR1P11362 822 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 PABPC1P11940 636 aaKnown RBP3.26□□□□□ -1.89
HMGB1-208ENST00000490788 BCL6P41182 706 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 GRIA2P42262 883 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 CEBPAP49715 358 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-208ENST00000490788 LINC00310P59036 64 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 RBL2Q08999 1139 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 CHRNA2Q15822 529 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 NFE2L2Q16236 605 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 INF2Q27J81 1249 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 MROH9Q5TGP6 573 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 DBX2Q6ZNG2 339 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 SPATC1Q76KD6 591 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 LRP10Q7Z4F1 713 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 LDHDQ86WU2 507 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 DCAF4Q8WV16 495 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 UBXN4Q92575 508 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 PHF20Q9BVI0 1012 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 CNTD2Q9H8S5 307 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 RXFP1Q9HBX9 757 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 CLDND1Q9NY35 253 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 MSRB2Q9Y3D2 182 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 KCTD3Q9Y597 815 aa3.26□□□□□ -1.89
HMGB1-208ENST00000490788 MYO15BQ96JP2 1530 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 TRBV23-1A0A0A0MS06 115 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 H7BY64 318 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 KRIT1O00522 736 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 DLX3O60479 287 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 NCAM1P13591 858 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 NAT1P18440 290 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 PI3P19957 117 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 FPR2P25090 351 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 RGS19P49795 217 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 CDR1P51861 262 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 EPHB3P54753 998 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 NCKAP1LP55160 1127 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 SUMO1P63165 101 aaKnown RBP3.25□□□□□ -1.89
HMGB1-208ENST00000490788 ZC3H12BQ5HYM0 836 aaKnown RBP3.25□□□□□ -1.89
HMGB1-208ENST00000490788 SLC35F1Q5T1Q4 408 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 TCERG1LQ5VWI1 586 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 MBLAC2Q68D91 279 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 CNKSR3Q6P9H4 555 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 RSPO2Q6UXX9 243 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-208ENST00000490788 EP400NLQ6ZTU2 488 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 MILR1Q7Z6M3 343 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 ZC3H18Q86VM9 953 aaKnown RBP3.25□□□□□ -1.89
HMGB1-208ENST00000490788 SCUBE1Q8IWY4 988 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 RCBTB1Q8NDN9 531 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 SEC14L1Q92503 715 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 MKL1Q969V6 931 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 TSPAN17Q96FV3 270 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 MRFAP1L1Q96HT8 127 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 ZFYVE21Q9BQ24 234 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 ALG1Q9BT22 464 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 MTA3Q9BTC8 594 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 RNF38Q9H0F5 515 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 IRF2BPLQ9H1B7 796 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 OSBPL2Q9H1P3 480 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 CD320Q9NPF0 282 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 ARHGEF4Q9NR80 690 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 GPR27Q9NS67 375 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 SNTG2Q9NY99 539 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 TMEFF2Q9UIK5 374 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-208ENST00000490788 NUB1Q9Y5A7 615 aa3.25□□□□□ -1.89
HMGB1-208ENST00000490788 PPP1R11O60927 126 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-208ENST00000490788 KIZQ2M2Z5 673 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 MTDHQ86UE4 582 aaKnown RBP3.24□□□□□ -1.89
HMGB1-208ENST00000490788 RIOX2Q8IUF8 465 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 CCDC103Q8IW40 242 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 IFNL3Q8IZI9 196 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 ZBTB38Q8NAP3 1195 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-208ENST00000490788 KREMEN2Q8NCW0 462 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 PLEKHO2Q8TD55 490 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms