RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 VAT1LQ9HCJ6 419 aa21.47■■□□□ 1.03
HDAC6-231ENST00000488905 COL4A4P53420 1690 aaPredicted RBP21.47■■□□□ 1.03
HDAC6-231ENST00000488905 ARHGEF16Q5VV41 709 aa21.46■■□□□ 1.03
HDAC6-231ENST00000488905 CHST3Q7LGC8 479 aa21.46■■□□□ 1.03
HDAC6-231ENST00000488905 SESTD1Q86VW0 696 aa21.46■■□□□ 1.03
HDAC6-231ENST00000488905 STAG2Q8N3U4 1231 aa21.46■■□□□ 1.03
HDAC6-231ENST00000488905 SLC9A7Q96T83 725 aa21.46■■□□□ 1.03
HDAC6-231ENST00000488905 AMNQ9BXJ7 453 aa21.46■■□□□ 1.03
HDAC6-231ENST00000488905 PXMP2Q9NR77 195 aa21.46■■□□□ 1.03
HDAC6-231ENST00000488905 OPLAHO14841 1288 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 CFBP00751 764 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 HSD17B4P51659 736 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 GHRHRQ02643 423 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 SEC23AQ15436 765 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 CCDC85BQ15834 202 aaPredicted RBP21.45■■□□□ 1.02
HDAC6-231ENST00000488905 PTGISQ16647 500 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 TMEM67Q5HYA8 995 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 CCDC155Q8N6L0 562 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 CAGE1Q8TC20 777 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 ATXN2LQ8WWM7 1075 aaKnown RBP21.45■■□□□ 1.02
HDAC6-231ENST00000488905 KAT2BQ92831 832 aa21.45■■□□□ 1.02
HDAC6-231ENST00000488905 CA3P07451 260 aa21.44■■□□□ 1.02
HDAC6-231ENST00000488905 GSPT1P15170 499 aaKnown RBP21.44■■□□□ 1.02
HDAC6-231ENST00000488905 CASTP20810 708 aaKnown RBP21.44■■□□□ 1.02
HDAC6-231ENST00000488905 GDF6Q6KF10 455 aaPredicted RBP21.44■■□□□ 1.02
HDAC6-231ENST00000488905 AFAP1L1Q8TED9 768 aa21.44■■□□□ 1.02
HDAC6-231ENST00000488905 EMID1Q96A84 441 aaPredicted RBP21.44■■□□□ 1.02
HDAC6-231ENST00000488905 CTAGE1Q96RT6 745 aa21.44■■□□□ 1.02
HDAC6-231ENST00000488905 FTOQ9C0B1 505 aaKnown RBP eCLIP21.44■■□□□ 1.02
HDAC6-231ENST00000488905 MAD2L2Q9UI95 211 aa21.44■■□□□ 1.02
HDAC6-231ENST00000488905 DDX41Q9UJV9 622 aaKnown RBP21.44■■□□□ 1.02
HDAC6-231ENST00000488905 MRVI1Q9Y6F6 885 aa21.44■■□□□ 1.02
HDAC6-231ENST00000488905 KLRF2D3W0D1 207 aa21.43■■□□□ 1.02
HDAC6-231ENST00000488905 PPP1R11O60927 126 aaPredicted RBP21.43■■□□□ 1.02
HDAC6-231ENST00000488905 EIF3JO75822 258 aaKnown RBP21.43■■□□□ 1.02
HDAC6-231ENST00000488905 NR3C2P08235 984 aa21.43■■□□□ 1.02
HDAC6-231ENST00000488905 DGKDQ16760 1214 aa21.43■■□□□ 1.02
HDAC6-231ENST00000488905 CYB5R4Q7L1T6 521 aa21.43■■□□□ 1.02
HDAC6-231ENST00000488905 MTMR8Q96EF0 704 aa21.43■■□□□ 1.02
HDAC6-231ENST00000488905 DOCK5Q9H7D0 1870 aa21.43■■□□□ 1.02
HDAC6-231ENST00000488905 BDP1A6H8Y1 2624 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 ZBTB5O15062 677 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 BAIAP3O94812 1187 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 PDE4AP27815 886 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 TTC22Q5TAA0 569 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 PPTC7Q8NI37 304 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 PHOSPHO2Q8TCD6 241 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 KATNAL1Q9BW62 490 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 TCF20Q9UGU0 1960 aaKnown RBP21.42■■□□□ 1.02
HDAC6-231ENST00000488905 GTF2IRD1Q9UHL9 959 aa21.42■■□□□ 1.02
HDAC6-231ENST00000488905 PALM3A6NDB9 673 aaPredicted RBP21.41■■□□□ 1.02
HDAC6-231ENST00000488905 ZNF286BP0CG31 522 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 RBL2Q08999 1139 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 TRDNQ13061 729 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 HERC6Q8IVU3 1022 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 DHX38Q92620 1227 aaKnown RBP21.41■■□□□ 1.02
HDAC6-231ENST00000488905 ASB2Q96Q27 587 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 PDCD2LQ9BRP1 358 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 PCDHA1Q9Y5I3 950 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 MICAL3Q7RTP6 2002 aa21.41■■□□□ 1.02
HDAC6-231ENST00000488905 F2P00734 622 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 SELPP16109 830 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 PSEN2P49810 448 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 MRPS5P82675 430 aaKnown RBP21.4■■□□□ 1.02
HDAC6-231ENST00000488905 LAMC2Q13753 1193 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 LRRC8DQ7L1W4 858 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 HOMER1Q86YM7 354 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 MICALL1Q8N3F8 863 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 C7orf31Q8N865 590 aa21.4■■□□□ 1.02
HDAC6-231ENST00000488905 MAP3K20Q9NYL2 800 aaKnown RBP21.4■■□□□ 1.02
HDAC6-231ENST00000488905 SIP14410 1827 aa21.39■■□□□ 1.02
HDAC6-231ENST00000488905 TNFRSF10AO00220 468 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 RGS20O76081 388 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 CYP21A2P08686 494 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 MYCLP12524 364 aaPredicted RBP21.39■■□□□ 1.01
HDAC6-231ENST00000488905 HOXA13P31271 388 aaPredicted RBP21.39■■□□□ 1.01
HDAC6-231ENST00000488905 MFSD10Q14728 455 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 GRM4Q14833 912 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 STOX1Q6ZVD7 989 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 DHX37Q8IY37 1157 aaKnown RBP21.39■■□□□ 1.01
HDAC6-231ENST00000488905 SAMD3Q8N6K7 520 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 HDAC6Q9UBN7 1215 aa21.39■■□□□ 1.01
HDAC6-231ENST00000488905 HAS3O00219 553 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 ARHGEF15O94989 841 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 PARNO95453 639 aaKnown RBP21.38■■□□□ 1.01
HDAC6-231ENST00000488905 HOXD8P13378 290 aaPredicted RBP21.38■■□□□ 1.01
HDAC6-231ENST00000488905 KCNJ6P48051 423 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 GPNMBQ14956 572 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 PGM5Q15124 567 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 KIAA0753Q2KHM9 967 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 SLC35G1Q2M3R5 365 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 IL31RAQ8NI17 732 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 ALG1Q9BT22 464 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 TSPYL2Q9H2G4 693 aaPredicted RBP21.38■■□□□ 1.01
HDAC6-231ENST00000488905 CERS4Q9HA82 394 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 U3KPZ7 1027 aaPredicted RBP21.38■■□□□ 1.01
HDAC6-231ENST00000488905 BRWD1Q9NSI6 2320 aa21.38■■□□□ 1.01
HDAC6-231ENST00000488905 ERICH2A1L162 156 aa21.37■■□□□ 1.01
HDAC6-231ENST00000488905 EPOPA6NHQ4 379 aa21.37■■□□□ 1.01
HDAC6-231ENST00000488905 KIF28PB7ZC32 967 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms