RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 SCN10AQ9Y5Y9 1956 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 GCOM1H8Y6P7 765 aaPredicted RBP14.25□□□□□ -0.13
SDC3-204ENST00000487984 RGS20O76081 388 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 POLR2MP0CAP2 368 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 MYCLP12524 364 aaPredicted RBP14.25□□□□□ -0.13
SDC3-204ENST00000487984 PBX2P40425 430 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 CHMP4BP1P59074 171 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 PTPN11Q06124 597 aaPredicted RBP14.25□□□□□ -0.13
SDC3-204ENST00000487984 TRAF1Q13077 416 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 COL9A3Q14050 684 aaPredicted RBP14.25□□□□□ -0.13
SDC3-204ENST00000487984 CASC1Q6TDU7 716 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 OTOP2Q7RTS6 562 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 SAMD3Q8N6K7 520 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 IL31RAQ8NI17 732 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 PIBF1Q8WXW3 757 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 KAT2BQ92831 832 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 EMID1Q96A84 441 aaPredicted RBP14.25□□□□□ -0.13
SDC3-204ENST00000487984 MYL10Q9BUA6 226 aa14.25□□□□□ -0.13
SDC3-204ENST00000487984 SLC27A2O14975 620 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 PRC1O43663 620 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 DDAH1O94760 285 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 GRIN2CQ14957 1233 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 PGM5Q15124 567 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 VSIG10LQ86VR7 867 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 RPUSD2Q8IZ73 545 aaKnown RBP14.24□□□□□ -0.13
SDC3-204ENST00000487984 ZNF654Q8IZM8 581 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 MAFAQ8NHW3 353 aaPredicted RBP14.24□□□□□ -0.13
SDC3-204ENST00000487984 MAP3K14Q99558 947 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 MTA3Q9BTC8 594 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 MTIF3Q9H2K0 278 aaKnown RBP14.24□□□□□ -0.13
SDC3-204ENST00000487984 ZNF576Q9H609 170 aa14.24□□□□□ -0.13
SDC3-204ENST00000487984 UNC80Q8N2C7 3258 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 EYSQ5T1H1 3165 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 SH2B2O14492 632 aaPredicted RBP14.23□□□□□ -0.13
SDC3-204ENST00000487984 FOSL2P15408 326 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 CASTP20810 708 aaKnown RBP14.23□□□□□ -0.13
SDC3-204ENST00000487984 MCM5P33992 734 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 LAMC2Q13753 1193 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 DGKDQ16760 1214 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 CREB3L3Q68CJ9 461 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 CENPQQ7L2Z9 268 aaPredicted RBP14.23□□□□□ -0.13
SDC3-204ENST00000487984 FCHSD1Q86WN1 690 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 PPTC7Q8NI37 304 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 CTCFLQ8NI51 663 aaPredicted RBP14.23□□□□□ -0.13
SDC3-204ENST00000487984 SPZ1Q9BXG8 430 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 ANO2Q9NQ90 1003 aa14.23□□□□□ -0.13
SDC3-204ENST00000487984 MYH6P13533 1939 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 DLL1O00548 723 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 PITPNM1O00562 1244 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 PFKMP08237 780 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 ZNF286BP0CG31 522 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 CCND2P30279 289 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 KIF5BP33176 963 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 NECTIN1Q15223 517 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 PTGISQ16647 500 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 BMP2KLQ5H9B9 411 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 GDF6Q6KF10 455 aaPredicted RBP14.22□□□□□ -0.13
SDC3-204ENST00000487984 NFXL1Q6ZNB6 911 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 DEFB128Q7Z7B8 93 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 SESTD1Q86VW0 696 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.22□□□□□ -0.13
SDC3-204ENST00000487984 DHX37Q8IY37 1157 aaKnown RBP14.22□□□□□ -0.13
SDC3-204ENST00000487984 GPKOWQ92917 476 aaPredicted RBP eCLIP14.22□□□□□ -0.13
SDC3-204ENST00000487984 ZFP91Q96JP5 570 aaPredicted RBP14.22□□□□□ -0.13
SDC3-204ENST00000487984 TMEM87BQ96K49 555 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 CTAGE1Q96RT6 745 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 NOD1Q9Y239 953 aa14.22□□□□□ -0.13
SDC3-204ENST00000487984 FRMPD4Q14CM0 1322 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 CCDC69A6NI79 296 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 ZBBXA8MT70 800 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 SORBS3O60504 671 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 PLEKHA8P1O95397 391 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 GGPS1O95749 300 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 IQCF3P0C7M6 154 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 HOXD8P13378 290 aaPredicted RBP14.21□□□□□ -0.13
SDC3-204ENST00000487984 RXRAP19793 462 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 UBA1P22314 1058 aaKnown RBP14.21□□□□□ -0.13
SDC3-204ENST00000487984 PSEN2P49810 448 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 SP2Q02086 613 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 RAB30Q15771 203 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 CELF3Q5SZQ8 465 aaKnown RBP14.21□□□□□ -0.13
SDC3-204ENST00000487984 MYSM1Q5VVJ2 828 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 KCNV1Q6PIU1 500 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 TMTC2Q8N394 836 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 RETREG2Q8NC44 543 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 RRP36Q96EU6 259 aaKnown RBP14.21□□□□□ -0.13
SDC3-204ENST00000487984 LRRC2Q9BYS8 371 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 PPP4R2Q9NY27 417 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 MSRAQ9UJ68 235 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 YBX2Q9Y2T7 364 aaKnown RBP14.21□□□□□ -0.13
SDC3-204ENST00000487984 SLC4A7Q9Y6M7 1214 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 BAZ2BQ9UIF8 2168 aaKnown RBP14.21□□□□□ -0.13
SDC3-204ENST00000487984 CUL9Q8IWT3 2517 aa14.21□□□□□ -0.13
SDC3-204ENST00000487984 CHD9Q3L8U1 2897 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 F2P00734 622 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 TGFB3P10600 412 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 SMARCA1P28370 1054 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 RFC2P35250 354 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 LIFRP42702 1097 aa14.2□□□□□ -0.14
SDC3-204ENST00000487984 BFSP2Q13515 415 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms