RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 NOD1Q9Y239 953 aa11.64□□□□□ -0.55
CPSF4-213ENST00000484112 IQCF3P0C7M6 154 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 ZNF543Q08ER8 600 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 PPP2R5BQ15173 497 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 SEC23AQ15436 765 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 ASPRV1Q53RT3 343 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 RNF207Q6ZRF8 634 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 MB21D2Q8IYB1 491 aaPredicted RBP11.63□□□□□ -0.55
CPSF4-213ENST00000484112 TMEM87BQ96K49 555 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 MAP3K14Q99558 947 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 ZKSCAN3Q9BRR0 538 aa11.63□□□□□ -0.55
CPSF4-213ENST00000484112 RBM47A0AV96 593 aaKnown RBP11.62□□□□□ -0.55
CPSF4-213ENST00000484112 IFIT3O14879 490 aaKnown RBP11.62□□□□□ -0.55
CPSF4-213ENST00000484112 ARHGEF15O94989 841 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 TXNP10599 105 aaKnown RBP11.62□□□□□ -0.55
CPSF4-213ENST00000484112 RFC2P35250 354 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 LIFRP42702 1097 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 TAP1Q03518 808 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 WTAPQ15007 396 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 STOX1Q6ZVD7 989 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 CYB5R4Q7L1T6 521 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 HERC6Q8IVU3 1022 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 PHOSPHO2Q8TCD6 241 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 KCNB2Q92953 911 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 MPHOSPH6Q99547 160 aaKnown RBP11.62□□□□□ -0.55
CPSF4-213ENST00000484112 EPHX3Q9H6B9 360 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 LRRC37A2A6NM11 1700 aa11.62□□□□□ -0.55
CPSF4-213ENST00000484112 NKRFO15226 690 aaKnown RBP eCLIP11.61□□□□□ -0.55
CPSF4-213ENST00000484112 TLL1O43897 1013 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 KPNA6O60684 536 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 PARP1P09874 1014 aaKnown RBP11.61□□□□□ -0.55
CPSF4-213ENST00000484112 POU3F3P20264 500 aaPredicted RBP11.61□□□□□ -0.55
CPSF4-213ENST00000484112 HSPA4P34932 840 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 KCNJ6P48051 423 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 RPS6P62753 249 aaKnown RBP11.61□□□□□ -0.55
CPSF4-213ENST00000484112 GRB10Q13322 594 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 BFSP2Q13515 415 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 PTGISQ16647 500 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 NFRKBQ6P4R8 1299 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 SPRED2Q7Z698 418 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 TMCO2Q7Z6W1 182 aaPredicted RBP11.61□□□□□ -0.55
CPSF4-213ENST00000484112 CLEC4DQ8WXI8 215 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 HLA-CQ95604 372 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 NEK1Q96PY6 1258 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 ZBED2Q9BTP6 218 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 COG5Q9UP83 839 aa11.61□□□□□ -0.55
CPSF4-213ENST00000484112 LOC102724159A0A0B4J2E5 919 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 A6NJR5 290 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 PITPNM1O00562 1244 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 CALM1P0DP23 149 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 CALM2P0DP24 149 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 CALM3P0DP25 149 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 TRAF1Q13077 416 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 PWP2Q15269 919 aaKnown RBP11.6□□□□□ -0.55
CPSF4-213ENST00000484112 CATIPQ7Z7H3 387 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 IGDCC4Q8TDY8 1250 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 SCFD2Q8WU76 684 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 LRFN3Q9BTN0 628 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 SCN5AQ14524 2016 aa11.6□□□□□ -0.55
CPSF4-213ENST00000484112 LCHNA4D1U4 455 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 B4DLN1 442 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 PRC1O43663 620 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 DDAH1O94760 285 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 ARIH2O95376 493 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 SMARCA1P28370 1054 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 MRPL12P52815 198 aaKnown RBP11.59□□□□□ -0.55
CPSF4-213ENST00000484112 ANTXR2P58335 489 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 PTPN11Q06124 597 aaPredicted RBP11.59□□□□□ -0.55
CPSF4-213ENST00000484112 USH1GQ495M9 461 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 SEPT14Q6ZU15 432 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 DHX32Q7L7V1 743 aaKnown RBP11.59□□□□□ -0.55
CPSF4-213ENST00000484112 CHST3Q7LGC8 479 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 SGMS1Q86VZ5 419 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 FBXL16Q8N461 479 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 CCDC155Q8N6L0 562 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 MTUS1Q9ULD2 1270 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 GTF3C3Q9Y5Q9 886 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 TAF6LQ9Y6J9 622 aa11.59□□□□□ -0.55
CPSF4-213ENST00000484112 LCTP09848 1927 aa11.58□□□□□ -0.55
CPSF4-213ENST00000484112 PRRC2BQ5JSZ5 2229 aaKnown RBP11.58□□□□□ -0.56
CPSF4-213ENST00000484112 PALM3A6NDB9 673 aaPredicted RBP11.58□□□□□ -0.56
CPSF4-213ENST00000484112 RBAK-RBAKDNI3L0D1 243 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 SH2B2O14492 632 aaPredicted RBP11.58□□□□□ -0.56
CPSF4-213ENST00000484112 BAIAP3O94812 1187 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 GOLGA8HP0CJ92 632 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 PSMA5P28066 241 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 KIF5BP33176 963 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 GNAQP50148 359 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 RCAN1P53805 252 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 TROAPQ12815 778 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 GRM4Q14833 912 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 LY6KQ17RY6 165 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 TMEM31Q5JXX7 168 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 GDF6Q6KF10 455 aaPredicted RBP11.58□□□□□ -0.56
CPSF4-213ENST00000484112 DNERQ8NFT8 737 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 GDPD5Q8WTR4 605 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 AFG1LQ8WV93 481 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 LZTS2Q9BRK4 669 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 UBA5Q9GZZ9 404 aa11.58□□□□□ -0.56
CPSF4-213ENST00000484112 LY9Q9HBG7 655 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms