RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 IL31RAQ8NI17 732 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 SNX21Q969T3 373 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 PGBD1Q96JS3 809 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 PHF20Q9BVI0 1012 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 ANO3Q9BYT9 981 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 EHMT1Q9H9B1 1298 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 TMEM260Q9NX78 707 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 OGDHLQ9ULD0 1010 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 KCNJ14Q9UNX9 436 aa13.68□□□□□ -0.22
VPS13D-204ENST00000469054 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.67□□□□□ -0.22
VPS13D-204ENST00000469054 DUSP11O75319 330 aaKnown RBP13.67□□□□□ -0.22
VPS13D-204ENST00000469054 STAM2O75886 525 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 MRPS9P82933 396 aaKnown RBP13.67□□□□□ -0.22
VPS13D-204ENST00000469054 NPY5RQ15761 445 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 PCNX4Q63HM2 1172 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 XRRA1Q6P2D8 792 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 SEPT14Q6ZU15 432 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 BLIDQ8IZY5 108 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 DAGLBQ8NCG7 672 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 RASGRP4Q8TDF6 673 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 SCFD2Q8WU76 684 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 WDR11Q9BZH6 1224 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 GJB4Q9NTQ9 266 aa13.67□□□□□ -0.22
VPS13D-204ENST00000469054 GNEQ9Y223 722 aaKnown RBP13.67□□□□□ -0.22
VPS13D-204ENST00000469054 MYH6P13533 1939 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 ADCY6O43306 1168 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 SMPD1P17405 629 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 CUL4AQ13619 759 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 TRIM29Q14134 588 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 TTLL4Q14679 1199 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 DUSP28Q4G0W2 176 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 FAM184AQ8NB25 1140 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 LENG1Q96BZ8 264 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-204ENST00000469054 ZFP91Q96JP5 570 aaPredicted RBP13.66□□□□□ -0.22
VPS13D-204ENST00000469054 XPNPEP3Q9NQH7 507 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 RTEL1Q9NZ71 1219 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 Q9Y3F1 56 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 CENPFP49454 3210 aa13.66□□□□□ -0.22
VPS13D-204ENST00000469054 K7ELQ4 463 aaPredicted RBP13.65□□□□□ -0.22
VPS13D-204ENST00000469054 M0R2N6 131 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 NKRFO15226 690 aaKnown RBP eCLIP13.65□□□□□ -0.22
VPS13D-204ENST00000469054 RGS20O76081 388 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 TXNP10599 105 aaKnown RBP13.65□□□□□ -0.22
VPS13D-204ENST00000469054 SREBF1P36956 1147 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 FOSBP53539 338 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 GNPTABQ3T906 1256 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 TMEM63BQ5T3F8 832 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 KRT40Q6A162 431 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 CCDC62Q6P9F0 684 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 KCNV1Q6PIU1 500 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 C8orf76Q96K31 380 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 INPP4AQ96PE3 977 aaPredicted RBP13.65□□□□□ -0.22
VPS13D-204ENST00000469054 DDX41Q9UJV9 622 aaKnown RBP13.65□□□□□ -0.22
VPS13D-204ENST00000469054 KIF3AQ9Y496 699 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.65□□□□□ -0.22
VPS13D-204ENST00000469054 MRVI1Q9Y6F6 885 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 PLXNA1Q9UIW2 1896 aa13.65□□□□□ -0.22
VPS13D-204ENST00000469054 LCTP09848 1927 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 DYNC1LI2O43237 492 aaPredicted RBP13.64□□□□□ -0.23
VPS13D-204ENST00000469054 ARIH2O95376 493 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 PGK1P00558 417 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 MMP1P03956 469 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 TGFB3P10600 412 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 ICAM3P32942 547 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 ARHGAP4P98171 946 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 TLK2Q86UE8 772 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 NLRX1Q86UT6 975 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 ANKLE1Q8NAG6 615 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 ARRDC4Q8NCT1 418 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 CRYGNQ8WXF5 182 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 SPC25Q9HBM1 224 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 BRMS1Q9HCU9 246 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 SMC3Q9UQE7 1217 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 UBIAD1Q9Y5Z9 338 aa13.64□□□□□ -0.23
VPS13D-204ENST00000469054 SPATA31C2B4DYI2 1134 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 MAFGO15525 162 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 ADAMTS4O75173 837 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 CYP3A4P08684 503 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 ITGB5P18084 799 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 PTGS1P23219 599 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 GJB2P29033 226 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 KRT2P35908 639 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 ZNF76P36508 570 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 MNX1P50219 401 aaPredicted RBP13.63□□□□□ -0.23
VPS13D-204ENST00000469054 GJA9P57773 515 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 NKX3-2P78367 333 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 LRRC41Q15345 812 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 LY6KQ17RY6 165 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 GJC2Q5T442 439 aaPredicted RBP13.63□□□□□ -0.23
VPS13D-204ENST00000469054 KRT25Q7Z3Z0 450 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 RNF180Q86T96 592 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 HSCBQ8IWL3 235 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 KLHDC9Q8NEP7 349 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 FBXO18Q8NFZ0 1043 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 OXER1Q8TDS5 423 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 GPRASP2Q96D09 838 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 MXRA8Q9BRK3 442 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 AP5M1Q9H0R1 490 aa13.63□□□□□ -0.23
VPS13D-204ENST00000469054 UPF3AQ9H1J1 476 aaKnown RBP13.63□□□□□ -0.23
VPS13D-204ENST00000469054 JADE2Q9NQC1 790 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms