RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 WNT8AQ9H1J5 351 aa20.3■□□□□ 0.84
COL7A1-206ENST00000466591 SEC63Q9UGP8 760 aaKnown RBP20.3■□□□□ 0.84
COL7A1-206ENST00000466591 RBM8AQ9Y5S9 174 aaKnown RBP20.3■□□□□ 0.84
COL7A1-206ENST00000466591 CCDC69A6NI79 296 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 CCND2P30279 289 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 PBX2P40425 430 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 LAMC2Q13753 1193 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 GRIN2CQ14957 1233 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 PTGISQ16647 500 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 KCNV1Q6PIU1 500 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 C7orf31Q8N865 590 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 CUL5Q93034 780 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 SLC28A3Q9HAS3 691 aa20.29■□□□□ 0.84
COL7A1-206ENST00000466591 PNMA6FA0A0J9YX94 578 aa20.28■□□□□ 0.84
COL7A1-206ENST00000466591 RFC2P35250 354 aa20.28■□□□□ 0.84
COL7A1-206ENST00000466591 HSD17B4P51659 736 aa20.28■□□□□ 0.84
COL7A1-206ENST00000466591 ARHGAP1Q07960 439 aa20.28■□□□□ 0.84
COL7A1-206ENST00000466591 CCDC62Q6P9F0 684 aa20.28■□□□□ 0.84
COL7A1-206ENST00000466591 SAMD3Q8N6K7 520 aa20.28■□□□□ 0.84
COL7A1-206ENST00000466591 RRP36Q96EU6 259 aaKnown RBP20.28■□□□□ 0.84
COL7A1-206ENST00000466591 SORBS3O60504 671 aa20.27■□□□□ 0.84
COL7A1-206ENST00000466591 MCM5P33992 734 aa20.27■□□□□ 0.84
COL7A1-206ENST00000466591 MAP4K1Q92918 833 aa20.27■□□□□ 0.84
COL7A1-206ENST00000466591 PDCD2LQ9BRP1 358 aa20.27■□□□□ 0.84
COL7A1-206ENST00000466591 ALG1Q9BT22 464 aa20.27■□□□□ 0.84
COL7A1-206ENST00000466591 MLXIPQ9HAP2 919 aa20.27■□□□□ 0.84
COL7A1-206ENST00000466591 ANO2Q9NQ90 1003 aa20.27■□□□□ 0.84
COL7A1-206ENST00000466591 CXXC1Q9P0U4 656 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-206ENST00000466591 DDX41Q9UJV9 622 aaKnown RBP20.27■□□□□ 0.84
COL7A1-206ENST00000466591 PRC1O43663 620 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 PPP1R11O60927 126 aaPredicted RBP20.26■□□□□ 0.83
COL7A1-206ENST00000466591 ATP2A2P16615 1042 aaKnown RBP20.26■□□□□ 0.83
COL7A1-206ENST00000466591 GNPTABQ3T906 1256 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 RASIP1Q5U651 963 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 PPP2R2DQ66LE6 453 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 SMARCC2Q8TAQ2 1214 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 PPM1EQ8WY54 764 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 SPATA33Q96N06 139 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 NKX2-4Q9H2Z4 354 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 RIOX1Q9H6W3 641 aa20.26■□□□□ 0.83
COL7A1-206ENST00000466591 PITPNM1O00562 1244 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 NOP56O00567 594 aaKnown RBP20.25■□□□□ 0.83
COL7A1-206ENST00000466591 DDAH1O94760 285 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 IGFBP4P22692 258 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 GNAQP50148 359 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 PGM5Q15124 567 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 STOX1Q6ZVD7 989 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 ZNF654Q8IZM8 581 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 TMTC2Q8N394 836 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 MTMR8Q96EF0 704 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 SENP2Q9HC62 589 aa20.25■□□□□ 0.83
COL7A1-206ENST00000466591 GGPS1O95749 300 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 ZNF286BP0CG31 522 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 KCNJ6P48051 423 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 PSEN2P49810 448 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 TROAPQ12815 778 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 MFSD10Q14728 455 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 RNF20Q5VTR2 975 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 SYNE3Q6ZMZ3 975 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 MB21D2Q8IYB1 491 aaPredicted RBP20.24■□□□□ 0.83
COL7A1-206ENST00000466591 PPTC7Q8NI37 304 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 CAGE1Q8TC20 777 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 LZTS2Q9BRK4 669 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 MYL10Q9BUA6 226 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 PRDM12Q9H4Q4 367 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 TAF6LQ9Y6J9 622 aa20.24■□□□□ 0.83
COL7A1-206ENST00000466591 KIF28PB7ZC32 967 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 IQCF3P0C7M6 154 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 CALM1P0DP23 149 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 CALM2P0DP24 149 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 CALM3P0DP25 149 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 RABGGTBP53611 331 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 KIAA0753Q2KHM9 967 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 AFAP1L1Q8TED9 768 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 EMID1Q96A84 441 aaPredicted RBP20.23■□□□□ 0.83
COL7A1-206ENST00000466591 TMEM87BQ96K49 555 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 COL6A3P12111 3177 aa20.23■□□□□ 0.83
COL7A1-206ENST00000466591 KIAA1217Q5T5P2 1943 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 OPLAHO14841 1288 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 ANTXR2P58335 489 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 GDF6Q6KF10 455 aaPredicted RBP20.22■□□□□ 0.83
COL7A1-206ENST00000466591 VSIG10LQ86VR7 867 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 IGDCC4Q8TDY8 1250 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 ZFP91Q96JP5 570 aaPredicted RBP20.22■□□□□ 0.83
COL7A1-206ENST00000466591 ESYT1Q9BSJ8 1104 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 LY9Q9HBG7 655 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 SLC12A7Q9Y666 1083 aa20.22■□□□□ 0.83
COL7A1-206ENST00000466591 CYTH3O43739 400 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 TGFB3P10600 412 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 GHRHRQ02643 423 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 CELF3Q5SZQ8 465 aaKnown RBP20.21■□□□□ 0.83
COL7A1-206ENST00000466591 SESTD1Q86VW0 696 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 IL31RAQ8NI17 732 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 SLC9A7Q96T83 725 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 MAP3K14Q99558 947 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 HDAC6Q9UBN7 1215 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 GTF2IRD1Q9UHL9 959 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 PCDHA11Q9Y5I1 949 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 SCN10AQ9Y5Y9 1956 aa20.21■□□□□ 0.83
COL7A1-206ENST00000466591 SLC27A2O14975 620 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms