RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 BFSP2Q13515 415 aa18.76■□□□□ 0.59
COL7A1-204ENST00000462475 PTGISQ16647 500 aa18.76■□□□□ 0.59
COL7A1-204ENST00000462475 GDF6Q6KF10 455 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-204ENST00000462475 RETREG2Q8NC44 543 aa18.76■□□□□ 0.59
COL7A1-204ENST00000462475 PXMP2Q9NR77 195 aa18.76■□□□□ 0.59
COL7A1-204ENST00000462475 REV3LO60673 3130 aa18.76■□□□□ 0.59
COL7A1-204ENST00000462475 MYO9BQ13459 2157 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 NR3C2P08235 984 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 ACTN1P12814 892 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 HSD17B4P51659 736 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 SLC35G1Q2M3R5 365 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 TMEM67Q5HYA8 995 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 SESTD1Q86VW0 696 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 MTMR8Q96EF0 704 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 AMNQ9BXJ7 453 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 FTOQ9C0B1 505 aaKnown RBP eCLIP18.75■□□□□ 0.59
COL7A1-204ENST00000462475 MAD2L2Q9UI95 211 aa18.75■□□□□ 0.59
COL7A1-204ENST00000462475 DDX41Q9UJV9 622 aaKnown RBP18.75■□□□□ 0.59
COL7A1-204ENST00000462475 KLRF2D3W0D1 207 aa18.74■□□□□ 0.59
COL7A1-204ENST00000462475 EIF3JO75822 258 aaKnown RBP18.74■□□□□ 0.59
COL7A1-204ENST00000462475 ARHGEF15O94989 841 aa18.74■□□□□ 0.59
COL7A1-204ENST00000462475 GHRHRQ02643 423 aa18.74■□□□□ 0.59
COL7A1-204ENST00000462475 TTC22Q5TAA0 569 aa18.74■□□□□ 0.59
COL7A1-204ENST00000462475 ATXN2LQ8WWM7 1075 aaKnown RBP18.74■□□□□ 0.59
COL7A1-204ENST00000462475 DHX38Q92620 1227 aaKnown RBP18.74■□□□□ 0.59
COL7A1-204ENST00000462475 SLC9A7Q96T83 725 aa18.74■□□□□ 0.59
COL7A1-204ENST00000462475 MRVI1Q9Y6F6 885 aa18.74■□□□□ 0.59
COL7A1-204ENST00000462475 TRANK1O15050 2925 aa18.74■□□□□ 0.59
COL7A1-204ENST00000462475 RBAK-RBAKDNI3L0D1 243 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 RFXAPO00287 272 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 ZNF286BP0CG31 522 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 CASTP20810 708 aaKnown RBP18.73■□□□□ 0.59
COL7A1-204ENST00000462475 GPNMBQ14956 572 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 DGKDQ16760 1214 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 MICALL1Q8N3F8 863 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 CAGE1Q8TC20 777 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 AFAP1L1Q8TED9 768 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 EMID1Q96A84 441 aaPredicted RBP18.73■□□□□ 0.59
COL7A1-204ENST00000462475 ASB2Q96Q27 587 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 CERS4Q9HA82 394 aa18.73■□□□□ 0.59
COL7A1-204ENST00000462475 PALM3A6NDB9 673 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-204ENST00000462475 EPOPA6NHQ4 379 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 ZBTB5O15062 677 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 RGS20O76081 388 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 HOXA13P31271 388 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-204ENST00000462475 HOMER1Q86YM7 354 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 HERC6Q8IVU3 1022 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 CCDC155Q8N6L0 562 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 IL31RAQ8NI17 732 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 PHOSPHO2Q8TCD6 241 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 PDCD2LQ9BRP1 358 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 SENP2Q9HC62 589 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 HDAC6Q9UBN7 1215 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 GTF2IRD1Q9UHL9 959 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 PCDHA1Q9Y5I3 950 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 TAF6LQ9Y6J9 622 aa18.72■□□□□ 0.59
COL7A1-204ENST00000462475 KIAA1217Q5T5P2 1943 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 SORBS3O60504 671 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 F2P00734 622 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 CYP21A2P08686 494 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 MYCLP12524 364 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-204ENST00000462475 SELPP16109 830 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 PSEN2P49810 448 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 PTH1RQ03431 593 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 LAMC2Q13753 1193 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 GRM4Q14833 912 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 STOX1Q6ZVD7 989 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 LRRC8DQ7L1W4 858 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 PPTC7Q8NI37 304 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 PIGSQ96S52 555 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 ALG1Q9BT22 464 aa18.71■□□□□ 0.59
COL7A1-204ENST00000462475 TET1Q8NFU7 2136 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 TNFRSF10AO00220 468 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 BAIAP3O94812 1187 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 MRPS5P82675 430 aaKnown RBP18.7■□□□□ 0.58
COL7A1-204ENST00000462475 TAP1Q03518 808 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 RBL2Q08999 1139 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 TRDNQ13061 729 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 MFSD10Q14728 455 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 KIAA0753Q2KHM9 967 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 DHX37Q8IY37 1157 aaKnown RBP18.7■□□□□ 0.58
COL7A1-204ENST00000462475 C7orf31Q8N865 590 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 MYH6P13533 1939 aa18.7■□□□□ 0.58
COL7A1-204ENST00000462475 HAS3O00219 553 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 IFIT3O14879 490 aaKnown RBP18.69■□□□□ 0.58
COL7A1-204ENST00000462475 CYTH3O43739 400 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 NBNO60934 754 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 CKBP12277 381 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 HOXD8P13378 290 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-204ENST00000462475 WDR5P61964 334 aaKnown RBP18.69■□□□□ 0.58
COL7A1-204ENST00000462475 PGM5Q15124 567 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 TCTN1Q2MV58 587 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 SPRED2Q7Z698 418 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 TMCO2Q7Z6W1 182 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-204ENST00000462475 ADAMTS19Q8TE59 1207 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 GPKOWQ92917 476 aaPredicted RBP eCLIP18.69■□□□□ 0.58
COL7A1-204ENST00000462475 WNT8BQ93098 351 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 ZFP91Q96JP5 570 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-204ENST00000462475 KATNAL1Q9BW62 490 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 RIOX1Q9H6W3 641 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 818.5 ms