RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PALM3A6NDB9 673 aaPredicted RBP8.21□□□□□ -1.1
VPS41-208ENST00000448833 IFIT3O14879 490 aaKnown RBP8.21□□□□□ -1.1
VPS41-208ENST00000448833 PPFIA4O75335 1185 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 STAM2O75886 525 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 CFBP00751 764 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 NR3C2P08235 984 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 SMARCA1P28370 1054 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 HSD17B4P51659 736 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 NUBP1P53384 320 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 GSE1Q14687 1217 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 GRIN2CQ14957 1233 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 WTAPQ15007 396 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 SEC23AQ15436 765 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 CCDC62Q6P9F0 684 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 SEPT14Q6ZU15 432 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 STOX1Q6ZVD7 989 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 OTOP2Q7RTS6 562 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 CATIPQ7Z7H3 387 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 SESTD1Q86VW0 696 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 DHX37Q8IY37 1157 aaKnown RBP8.21□□□□□ -1.1
VPS41-208ENST00000448833 CAGE1Q8TC20 777 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 AFAP1L1Q8TED9 768 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 TAAR1Q96RJ0 339 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 MAP3K14Q99558 947 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 PBX4Q9BYU1 374 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 PXMP2Q9NR77 195 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 MRVI1Q9Y6F6 885 aa8.21□□□□□ -1.1
VPS41-208ENST00000448833 BAZ2BQ9UIF8 2168 aaKnown RBP8.21□□□□□ -1.1
VPS41-208ENST00000448833 SCN5AQ14524 2016 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 CDH23Q9H251 3354 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 TANC1Q9C0D5 1861 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 PNMA6FA0A0J9YX94 578 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 ZBBXA8MT70 800 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 GCOM1H8Y6P7 765 aaPredicted RBP8.2□□□□□ -1.1
VPS41-208ENST00000448833 EFCAB14O75071 495 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 BAIAP3O94812 1187 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 POLR2MP0CAP2 368 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 ATP2A2P16615 1042 aaKnown RBP8.2□□□□□ -1.1
VPS41-208ENST00000448833 CHMLP26374 656 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 KIF5BP33176 963 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 GNAQP50148 359 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 PTGISQ16647 500 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 GNPTABQ3T906 1256 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 TMEM63BQ5T3F8 832 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 C7orf31Q8N865 590 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 PPTC7Q8NI37 304 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 AFG1LQ8WV93 481 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 ATXN2LQ8WWM7 1075 aaKnown RBP8.2□□□□□ -1.1
VPS41-208ENST00000448833 MTMR8Q96EF0 704 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 FAM212AQ96EL1 285 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 SLC9A7Q96T83 725 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 LZTS2Q9BRK4 669 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 FTOQ9C0B1 505 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS41-208ENST00000448833 WNT8AQ9H1J5 351 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 RIOX1Q9H6W3 641 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 TRMT13Q9NUP7 481 aaKnown RBP8.2□□□□□ -1.1
VPS41-208ENST00000448833 DDX41Q9UJV9 622 aaKnown RBP8.2□□□□□ -1.1
VPS41-208ENST00000448833 DDX49Q9Y6V7 483 aaKnown RBP8.2□□□□□ -1.1
VPS41-208ENST00000448833 TRANK1O15050 2925 aa8.2□□□□□ -1.1
VPS41-208ENST00000448833 CHD9Q3L8U1 2897 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 POTEMA6NI47 508 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 E7EWF7 191 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 MMP3P08254 477 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CYP21A2P08686 494 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 IQCF3P0C7M6 154 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CALM1P0DP23 149 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CALM2P0DP24 149 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CALM3P0DP25 149 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CYP2C9P11712 490 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 EIF2AK2P19525 551 aaKnown RBP8.19□□□□□ -1.1
VPS41-208ENST00000448833 CCND2P30279 289 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CHMP4BP1P59074 171 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 ARHGAP1Q07960 439 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 GRM4Q14833 912 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 LY6KQ17RY6 165 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 TMEM67Q5HYA8 995 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 XRRA1Q6P2D8 792 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CASC1Q6TDU7 716 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CHST3Q7LGC8 479 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 VSIG10LQ86VR7 867 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 GIMAP8Q8ND71 665 aaPredicted RBP8.19□□□□□ -1.1
VPS41-208ENST00000448833 CTCFLQ8NI51 663 aaPredicted RBP8.19□□□□□ -1.1
VPS41-208ENST00000448833 TBC1D5Q92609 795 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 MAP4K1Q92918 833 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 CUL5Q93034 780 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 SCLYQ96I15 445 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 PDCD2LQ9BRP1 358 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 COL25A1Q9BXS0 654 aaPredicted RBP8.19□□□□□ -1.1
VPS41-208ENST00000448833 CPVLQ9H3G5 476 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 SEC63Q9UGP8 760 aaKnown RBP8.19□□□□□ -1.1
VPS41-208ENST00000448833 MAD2L2Q9UI95 211 aa8.19□□□□□ -1.1
VPS41-208ENST00000448833 GRXCR1A8MXD5 290 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 SGSM2O43147 1006 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 GTPBP6O43824 516 aaPredicted RBP8.18□□□□□ -1.1
VPS41-208ENST00000448833 ARIH2O95376 493 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 GNAT1P11488 350 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 MYCLP12524 364 aaPredicted RBP8.18□□□□□ -1.1
VPS41-208ENST00000448833 GSPT1P15170 499 aaKnown RBP8.18□□□□□ -1.1
VPS41-208ENST00000448833 SELPP16109 830 aa8.18□□□□□ -1.1
VPS41-208ENST00000448833 MCM5P33992 734 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms