RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 HOXC12P31275 282 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 MC3RP41968 323 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 PPP2R2AP63151 447 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 RBM10P98175 930 aaKnown RBP5.18□□□□□ -1.58
VPS41-207ENST00000439468 SF1Q15637 639 aaKnown RBP5.18□□□□□ -1.58
VPS41-207ENST00000439468 C21orf62-AS1Q17RA5 79 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 INF2Q27J81 1249 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 PRSS53Q2L4Q9 553 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 EGFLAMQ63HQ2 1017 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 FRS2Q8WU20 508 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 DIO2Q92813 273 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 DACT3Q96B18 629 aaPredicted RBP5.18□□□□□ -1.58
VPS41-207ENST00000439468 CHAMP1Q96JM3 812 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 MTA3Q9BTC8 594 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 AP5M1Q9H0R1 490 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 EPB41L4AQ9HCS5 686 aaPredicted RBP5.18□□□□□ -1.58
VPS41-207ENST00000439468 SIT1Q9Y3P8 196 aa5.18□□□□□ -1.58
VPS41-207ENST00000439468 SBNO2Q9Y2G9 1366 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 C22orf46C9J442 243 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 PPP1R12AO14974 1030 aaPredicted RBP5.17□□□□□ -1.58
VPS41-207ENST00000439468 SASH1O94885 1247 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 ASGR2P07307 311 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 PMLP29590 882 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 RPL11P62913 178 aaKnown RBP5.17□□□□□ -1.58
VPS41-207ENST00000439468 FOXO4P98177 505 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 C2orf27AQ580R0 203 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 FAM209AQ5JX71 171 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 IQCEQ6IPM2 695 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 DCP2Q8IU60 420 aaKnown RBP5.17□□□□□ -1.58
VPS41-207ENST00000439468 PPIL6Q8IXY8 311 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 NPLOC4Q8TAT6 608 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 RNF38Q9H0F5 515 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 ARHGEF4Q9NR80 690 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 TIMM13Q9Y5L4 95 aaPredicted RBP5.17□□□□□ -1.58
VPS41-207ENST00000439468 PMF1-BGLAPU3KQ54 211 aa5.17□□□□□ -1.58
VPS41-207ENST00000439468 ARID1BQ8NFD5 2236 aaPredicted RBP5.17□□□□□ -1.58
VPS41-207ENST00000439468 TRIM13O60858 407 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 ZBTB7AO95365 584 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 CPP00450 1065 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 FPR2P25090 351 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 KCNAB2Q13303 367 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 SLC9A5Q14940 896 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 TKFCQ3LXA3 575 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 E4F1Q66K89 784 aaPredicted RBP5.16□□□□□ -1.58
VPS41-207ENST00000439468 TTLL10Q6ZVT0 673 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 JMYQ8N9B5 988 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 ZBTB38Q8NAP3 1195 aaPredicted RBP5.16□□□□□ -1.58
VPS41-207ENST00000439468 THAP3Q8WTV1 239 aaPredicted RBP5.16□□□□□ -1.58
VPS41-207ENST00000439468 TSPAN17Q96FV3 270 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 TRMT2BQ96GJ1 504 aaKnown RBP5.16□□□□□ -1.58
VPS41-207ENST00000439468 EXOC2Q96KP1 924 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 EPN3Q9H201 632 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 PARD6AQ9NPB6 346 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 TMEFF2Q9UIK5 374 aaPredicted RBP5.16□□□□□ -1.58
VPS41-207ENST00000439468 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.16□□□□□ -1.58
VPS41-207ENST00000439468 COA3Q9Y2R0 106 aaPredicted RBP5.16□□□□□ -1.58
VPS41-207ENST00000439468 IRS2Q9Y4H2 1338 aa5.16□□□□□ -1.58
VPS41-207ENST00000439468 ASMTLO95671 621 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 CAPNS1P04632 268 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 ATF2P15336 505 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 IGFBP6P24592 240 aaPredicted RBP5.15□□□□□ -1.59
VPS41-207ENST00000439468 BCL6P41182 706 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 GFRA1P56159 465 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 CTSWP56202 376 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 CYP4F3Q08477 520 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 LILRA6Q6PI73 481 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 CEP68Q76N32 757 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 LRRC47Q8N1G4 583 aaKnown RBP5.15□□□□□ -1.59
VPS41-207ENST00000439468 TMEM145Q8NBT3 493 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 PLEKHO2Q8TD55 490 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 DPF3Q92784 378 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 CCDC140Q96MF4 163 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 TMEM260Q9NX78 707 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 PCDHA2Q9Y5H9 948 aa5.15□□□□□ -1.59
VPS41-207ENST00000439468 BLACEA4D250 179 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 PRODHO43272 600 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 HOXA5P20719 270 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 FBLN1P23142 703 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 LTBRP36941 435 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 GTF2A2P52657 109 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 HSP90AA2PQ14568 343 aaPredicted RBP5.14□□□□□ -1.59
VPS41-207ENST00000439468 CCDC103Q8IW40 242 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 SP8Q8IXZ3 490 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 MARCH10Q8NA82 808 aaPredicted RBP5.14□□□□□ -1.59
VPS41-207ENST00000439468 SMARCC2Q8TAQ2 1214 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 FEZF2Q8TBJ5 459 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 KCTD13Q8WZ19 329 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 APPBP2Q92624 585 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 ZNF669Q96BR6 464 aaPredicted RBP5.14□□□□□ -1.59
VPS41-207ENST00000439468 DDX11Q96FC9 970 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 TMEM169Q96HH4 297 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 SGSM3Q96HU1 749 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 YIPF4Q9BSR8 244 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 AARSD1Q9BTE6 412 aaKnown RBP5.14□□□□□ -1.59
VPS41-207ENST00000439468 IER2Q9BTL4 223 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 KRTAP17-1Q9BYP8 105 aa5.14□□□□□ -1.59
VPS41-207ENST00000439468 TRAV20A0A0B4J274 112 aa5.13□□□□□ -1.59
VPS41-207ENST00000439468 IQCA1LA6NCM1 817 aa5.13□□□□□ -1.59
VPS41-207ENST00000439468 ENPP3O14638 875 aa5.13□□□□□ -1.59
VPS41-207ENST00000439468 CDC45O75419 566 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms